miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18603 5' -56.3 NC_004682.1 + 18415 0.66 0.644078
Target:  5'- --uUCACgGCGaacUGGCGCUggauGCGUCGg -3'
miRNA:   3'- guuGGUGgCGCgu-ACCGCGA----UGCAGU- -5'
18603 5' -56.3 NC_004682.1 + 14701 0.66 0.644078
Target:  5'- uCGGCCACaCGuCGCGUGGCGacaUGCc--- -3'
miRNA:   3'- -GUUGGUG-GC-GCGUACCGCg--AUGcagu -5'
18603 5' -56.3 NC_004682.1 + 45154 0.66 0.633025
Target:  5'- cCGACaACCGCGCAaaGCGC-AgGUCAg -3'
miRNA:   3'- -GUUGgUGGCGCGUacCGCGaUgCAGU- -5'
18603 5' -56.3 NC_004682.1 + 47889 0.66 0.633025
Target:  5'- cCAGCUcuGCCGUGCucgaGCGCUGCGa-- -3'
miRNA:   3'- -GUUGG--UGGCGCGuac-CGCGAUGCagu -5'
18603 5' -56.3 NC_004682.1 + 21189 0.66 0.621971
Target:  5'- uCGACCACC-UG-GUGGCGCUgaagcaggGCGUCu -3'
miRNA:   3'- -GUUGGUGGcGCgUACCGCGA--------UGCAGu -5'
18603 5' -56.3 NC_004682.1 + 27421 0.66 0.621971
Target:  5'- aCAAUCGCCgucgGCGCAcUGGCGUUcucGCuGUCGu -3'
miRNA:   3'- -GUUGGUGG----CGCGU-ACCGCGA---UG-CAGU- -5'
18603 5' -56.3 NC_004682.1 + 42191 0.66 0.610925
Target:  5'- gCGAggACCGCGCAgacGGCG--GCGUCAa -3'
miRNA:   3'- -GUUggUGGCGCGUa--CCGCgaUGCAGU- -5'
18603 5' -56.3 NC_004682.1 + 4381 0.67 0.567021
Target:  5'- aAGCCGCCGC-CAcgGGCGCggaGCG-CGg -3'
miRNA:   3'- gUUGGUGGCGcGUa-CCGCGa--UGCaGU- -5'
18603 5' -56.3 NC_004682.1 + 38838 0.67 0.555074
Target:  5'- aCGGCUugucgauGCCGUGgAUGGCaGCcGCGUCGa -3'
miRNA:   3'- -GUUGG-------UGGCGCgUACCG-CGaUGCAGU- -5'
18603 5' -56.3 NC_004682.1 + 36531 0.67 0.53462
Target:  5'- gGACCGCCGCGUugAUGGgagGCUugGa-- -3'
miRNA:   3'- gUUGGUGGCGCG--UACCg--CGAugCagu -5'
18603 5' -56.3 NC_004682.1 + 34677 0.67 0.53462
Target:  5'- cCGACCucGCCGCGCAucgacuucucgaUGGCuucgaGCUGgGUCu -3'
miRNA:   3'- -GUUGG--UGGCGCGU------------ACCG-----CGAUgCAGu -5'
18603 5' -56.3 NC_004682.1 + 27549 0.67 0.53462
Target:  5'- -cGCUACgGCgGCGacacUGGCGCUGCGgCAg -3'
miRNA:   3'- guUGGUGgCG-CGU----ACCGCGAUGCaGU- -5'
18603 5' -56.3 NC_004682.1 + 35125 0.67 0.533551
Target:  5'- cCGGCCACCacgcacuGCGCgAUGGCGUg--GUCGa -3'
miRNA:   3'- -GUUGGUGG-------CGCG-UACCGCGaugCAGU- -5'
18603 5' -56.3 NC_004682.1 + 4720 0.68 0.523962
Target:  5'- gGAUCGCCGUgugccGCA-GGCGCgcuacACGUCGg -3'
miRNA:   3'- gUUGGUGGCG-----CGUaCCGCGa----UGCAGU- -5'
18603 5' -56.3 NC_004682.1 + 11508 0.68 0.513385
Target:  5'- -uGCCGCCGCGCcaacGGCaagcggaagcgGCUcaGCGUCGa -3'
miRNA:   3'- guUGGUGGCGCGua--CCG-----------CGA--UGCAGU- -5'
18603 5' -56.3 NC_004682.1 + 5268 0.68 0.513385
Target:  5'- -uGCuCGCCGCGCuggGGCuGCUGC-UCAc -3'
miRNA:   3'- guUG-GUGGCGCGua-CCG-CGAUGcAGU- -5'
18603 5' -56.3 NC_004682.1 + 23188 0.69 0.432412
Target:  5'- aAAUCACCGUGCccgauGUGGCauucgcaugcGCUACGUUg -3'
miRNA:   3'- gUUGGUGGCGCG-----UACCG----------CGAUGCAGu -5'
18603 5' -56.3 NC_004682.1 + 21174 0.69 0.422816
Target:  5'- -cACCAUCGUGUGUcGGCGCUACcUCc -3'
miRNA:   3'- guUGGUGGCGCGUA-CCGCGAUGcAGu -5'
18603 5' -56.3 NC_004682.1 + 41444 0.69 0.422816
Target:  5'- aGGCCgACCaCGCA-GGCGCU-CGUCGa -3'
miRNA:   3'- gUUGG-UGGcGCGUaCCGCGAuGCAGU- -5'
18603 5' -56.3 NC_004682.1 + 14334 0.71 0.334315
Target:  5'- uCGACCuCCGUGCGgcucuggaGGCGCUGCGa-- -3'
miRNA:   3'- -GUUGGuGGCGCGUa-------CCGCGAUGCagu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.