Results 1 - 20 of 21 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. |
strand![]() |
Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18604 | 5' | -59.5 | NC_004682.1 | + | 3692 | 0.72 | 0.195477 |
Target: 5'- gCUGACCGccacGGCgGGAGuCGUCGCugaCGGCGa -3' miRNA: 3'- -GACUGGC----UCGaCCUC-GCAGUG---GCCGU- -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 9533 | 0.66 | 0.484858 |
Target: 5'- -gGGCgagGAGCUGG-GCGUCgaccccgagACCGGCc -3' miRNA: 3'- gaCUGg--CUCGACCuCGCAG---------UGGCCGu -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 12171 | 0.67 | 0.408168 |
Target: 5'- -gGACCGGcacccuGCUGGAcaaCGUCACCGaGCc -3' miRNA: 3'- gaCUGGCU------CGACCUc--GCAGUGGC-CGu -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 2946 | 0.67 | 0.390207 |
Target: 5'- cCUGAUCGAcuuCUGGGGCGcgggCGgCGGCGc -3' miRNA: 3'- -GACUGGCUc--GACCUCGCa---GUgGCCGU- -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 41933 | 0.67 | 0.381422 |
Target: 5'- -aGACCGug--GGcAGCGggUCACCGGCAg -3' miRNA: 3'- gaCUGGCucgaCC-UCGC--AGUGGCCGU- -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 43475 | 0.68 | 0.372771 |
Target: 5'- gCUGuagacGCCaAGCUGGaAGuCGUCACCGGgGg -3' miRNA: 3'- -GAC-----UGGcUCGACC-UC-GCAGUGGCCgU- -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 5448 | 0.68 | 0.372771 |
Target: 5'- gCUGGCCGAuCUGaAGUGg-GCCGGCAu -3' miRNA: 3'- -GACUGGCUcGACcUCGCagUGGCCGU- -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 12043 | 0.69 | 0.323718 |
Target: 5'- cCUGGCCGAGaCgaccaaGGucGUGUCGCUGGCc -3' miRNA: 3'- -GACUGGCUC-Ga-----CCu-CGCAGUGGCCGu -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 7136 | 0.69 | 0.308472 |
Target: 5'- cCUGcCCGAgaagacgcucgGCUGGGGCGUCcugaACUGGUg -3' miRNA: 3'- -GACuGGCU-----------CGACCUCGCAG----UGGCCGu -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 6880 | 0.7 | 0.279639 |
Target: 5'- aCUGAUCGAGCuUGGAcaGCGUCcgcucACCgagGGCAu -3' miRNA: 3'- -GACUGGCUCG-ACCU--CGCAG-----UGG---CCGU- -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 9112 | 0.71 | 0.228468 |
Target: 5'- cCUGACCG-GCUGGAGCauggagaaGUCgGCCagGGCGg -3' miRNA: 3'- -GACUGGCuCGACCUCG--------CAG-UGG--CCGU- -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 32876 | 0.7 | 0.279639 |
Target: 5'- aUGAUCGAGac-GAGCGgcaggaUCGCCGGCAu -3' miRNA: 3'- gACUGGCUCgacCUCGC------AGUGGCCGU- -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 17974 | 0.68 | 0.355872 |
Target: 5'- -cGACgGAGCUGG-GCGUCcacgaaccGCCaGCGg -3' miRNA: 3'- gaCUGgCUCGACCuCGCAG--------UGGcCGU- -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 10470 | 0.68 | 0.355872 |
Target: 5'- gCUGAUCGAGCUGGcccAGCGagGCuucgCGGUg -3' miRNA: 3'- -GACUGGCUCGACC---UCGCagUG----GCCGu -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 2739 | 0.68 | 0.364253 |
Target: 5'- -cGACCGAGUgaUGcucGcCGUCACCGGCc -3' miRNA: 3'- gaCUGGCUCG--ACcu-C-GCAGUGGCCGu -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 40333 | 0.68 | 0.364253 |
Target: 5'- -cGACCuGGGCcacgccuGCGUCACCGGCc -3' miRNA: 3'- gaCUGG-CUCGaccu---CGCAGUGGCCGu -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 35832 | 0.67 | 0.41734 |
Target: 5'- -----gGAGCUGGAucGCGUCGucCCGGCGc -3' miRNA: 3'- gacuggCUCGACCU--CGCAGU--GGCCGU- -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 24907 | 0.67 | 0.426636 |
Target: 5'- -gGACCcGGCUGGAgGCGcaaccgCGCCGuGCGu -3' miRNA: 3'- gaCUGGcUCGACCU-CGCa-----GUGGC-CGU- -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 15926 | 0.67 | 0.426636 |
Target: 5'- aCUGACCGAGg-GGAugGUCGCCaacGGCGa -3' miRNA: 3'- -GACUGGCUCgaCCUcgCAGUGG---CCGU- -5' |
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18604 | 5' | -59.5 | NC_004682.1 | + | 18618 | 0.66 | 0.484858 |
Target: 5'- --cGCCGAGCUGaAGCGaaaGCUGGCc -3' miRNA: 3'- gacUGGCUCGACcUCGCag-UGGCCGu -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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