miRNA display CGI


Results 1 - 12 of 12 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18605 5' -52.7 NC_004682.1 + 17908 0.66 0.797027
Target:  5'- cGCAACUGCUGCC--UCacgUCGuGUCGUu -3'
miRNA:   3'- -CGUUGACGAUGGcuAGga-AGU-CGGCA- -5'
18605 5' -52.7 NC_004682.1 + 46066 0.66 0.797027
Target:  5'- cGCAGCgGCagUGCUGGUCUccgCAGUCGUc -3'
miRNA:   3'- -CGUUGaCG--AUGGCUAGGaa-GUCGGCA- -5'
18605 5' -52.7 NC_004682.1 + 20804 0.66 0.796029
Target:  5'- gGCGACUGCUACCucgacguGGUCUUcaAGCaCGa -3'
miRNA:   3'- -CGUUGACGAUGG-------CUAGGAagUCG-GCa -5'
18605 5' -52.7 NC_004682.1 + 28462 0.67 0.766355
Target:  5'- aCGACUGC-ACCGAcuuggcUCCUcucgCAGUCGg -3'
miRNA:   3'- cGUUGACGaUGGCU------AGGAa---GUCGGCa -5'
18605 5' -52.7 NC_004682.1 + 14619 0.68 0.723471
Target:  5'- aCGGCUGC-GCCGAcUCCUgcUCAGCUc- -3'
miRNA:   3'- cGUUGACGaUGGCU-AGGA--AGUCGGca -5'
18605 5' -52.7 NC_004682.1 + 46051 0.69 0.656502
Target:  5'- -gAugUGCUcccacaGCCGGUCCUUCugAGCCu- -3'
miRNA:   3'- cgUugACGA------UGGCUAGGAAG--UCGGca -5'
18605 5' -52.7 NC_004682.1 + 31871 0.69 0.633862
Target:  5'- -gAACUGCUcACCGAa-CUUCAGCCc- -3'
miRNA:   3'- cgUUGACGA-UGGCUagGAAGUCGGca -5'
18605 5' -52.7 NC_004682.1 + 43509 0.7 0.577412
Target:  5'- cGCGGCUGCgaACgGGUCCUUgcccCAGCCc- -3'
miRNA:   3'- -CGUUGACGa-UGgCUAGGAA----GUCGGca -5'
18605 5' -52.7 NC_004682.1 + 21808 0.7 0.577411
Target:  5'- gGCAuGCcGCUGCCGAUCCcgCuGCUGg -3'
miRNA:   3'- -CGU-UGaCGAUGGCUAGGaaGuCGGCa -5'
18605 5' -52.7 NC_004682.1 + 36148 0.7 0.5551
Target:  5'- cGCGACgUGUgGCCGAUgCUguccCAGCCGg -3'
miRNA:   3'- -CGUUG-ACGaUGGCUAgGAa---GUCGGCa -5'
18605 5' -52.7 NC_004682.1 + 1550 0.7 0.5551
Target:  5'- gGCGACgUGCUGCgGGUCCU--GGUCGa -3'
miRNA:   3'- -CGUUG-ACGAUGgCUAGGAagUCGGCa -5'
18605 5' -52.7 NC_004682.1 + 17767 1.1 0.001422
Target:  5'- cGCAACUGCUACCGAUCCUUCAGCCGUc -3'
miRNA:   3'- -CGUUGACGAUGGCUAGGAAGUCGGCA- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.