miRNA display CGI


Results 1 - 20 of 52 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18607 3' -56 NC_004682.1 + 22870 0.66 0.621687
Target:  5'- cGguGGCaucaugGCCGUCGucGGCcuGGUGGCCu -3'
miRNA:   3'- uUguCCGa-----UGGCGGUu-UCG--UCACCGG- -5'
18607 3' -56 NC_004682.1 + 2964 0.66 0.610459
Target:  5'- cGCGGGCgGCgGCgCuGGGCAGUGGa- -3'
miRNA:   3'- uUGUCCGaUGgCG-GuUUCGUCACCgg -5'
18607 3' -56 NC_004682.1 + 20917 0.66 0.610459
Target:  5'- cAGCAGGCUAUccaggaacugCGCCGGaucggcgcguucGGCAGgucUGGCg -3'
miRNA:   3'- -UUGUCCGAUG----------GCGGUU------------UCGUC---ACCGg -5'
18607 3' -56 NC_004682.1 + 18277 0.66 0.610459
Target:  5'- uGGCAGGCgaACUGCUGAGGCAGcu-CCg -3'
miRNA:   3'- -UUGUCCGa-UGGCGGUUUCGUCaccGG- -5'
18607 3' -56 NC_004682.1 + 17250 0.66 0.610459
Target:  5'- uGCAGGa---CGCCuacGAGCAGaUGGUCg -3'
miRNA:   3'- uUGUCCgaugGCGGu--UUCGUC-ACCGG- -5'
18607 3' -56 NC_004682.1 + 23656 0.66 0.609337
Target:  5'- cGACGGGcCUGCgGCCcuccugcGGGGCgaguucgaugAGUGGCUg -3'
miRNA:   3'- -UUGUCC-GAUGgCGG-------UUUCG----------UCACCGG- -5'
18607 3' -56 NC_004682.1 + 30400 0.66 0.599251
Target:  5'- -uCAGccGCUGCaCGCCGGGGUAGgcccGGUCg -3'
miRNA:   3'- uuGUC--CGAUG-GCGGUUUCGUCa---CCGG- -5'
18607 3' -56 NC_004682.1 + 20397 0.66 0.588071
Target:  5'- gGACAuGGagGCUGCC-AAGCAgGUGGUCg -3'
miRNA:   3'- -UUGU-CCgaUGGCGGuUUCGU-CACCGG- -5'
18607 3' -56 NC_004682.1 + 10512 0.66 0.588071
Target:  5'- cGCAGGCgugGCCcaggucgcGCUAcGAGCAGUGcGCg -3'
miRNA:   3'- uUGUCCGa--UGG--------CGGU-UUCGUCAC-CGg -5'
18607 3' -56 NC_004682.1 + 44282 0.66 0.581382
Target:  5'- uGCAGGCUGCCcuucggguccaugauGUCGugcuuGAGCAccUGGCCg -3'
miRNA:   3'- uUGUCCGAUGG---------------CGGU-----UUCGUc-ACCGG- -5'
18607 3' -56 NC_004682.1 + 33582 0.66 0.576931
Target:  5'- gGACAGGUaGCCgaaggcGUCGGAGCccgAGcUGGCCa -3'
miRNA:   3'- -UUGUCCGaUGG------CGGUUUCG---UC-ACCGG- -5'
18607 3' -56 NC_004682.1 + 1972 0.66 0.576931
Target:  5'- cGCuGGCggucugcugUACCGCUAcacGGCGGuUGGCCc -3'
miRNA:   3'- uUGuCCG---------AUGGCGGUu--UCGUC-ACCGG- -5'
18607 3' -56 NC_004682.1 + 23653 0.66 0.573597
Target:  5'- cAGCAGGagACCGgCGcgaagugggucgccGAGCAG-GGCCa -3'
miRNA:   3'- -UUGUCCgaUGGCgGU--------------UUCGUCaCCGG- -5'
18607 3' -56 NC_004682.1 + 47535 0.66 0.565837
Target:  5'- cGACGGGgUGCgUGCCcaucaGGUGGCCg -3'
miRNA:   3'- -UUGUCCgAUG-GCGGuuucgUCACCGG- -5'
18607 3' -56 NC_004682.1 + 38526 0.67 0.559207
Target:  5'- -uCGGGCUcuGCCGCagcaGagcgagcguguuguaGAGCcGUGGCCg -3'
miRNA:   3'- uuGUCCGA--UGGCGg---U---------------UUCGuCACCGG- -5'
18607 3' -56 NC_004682.1 + 30851 0.67 0.559207
Target:  5'- -cCAGGCgcgacuucACCGUCGcGGCAGUcgcguugcgggcgauGGCCg -3'
miRNA:   3'- uuGUCCGa-------UGGCGGUuUCGUCA---------------CCGG- -5'
18607 3' -56 NC_004682.1 + 48166 0.67 0.543826
Target:  5'- aGGCAGaggucGCUGCCGCCAcaccgggcGAGCAucUGGUCc -3'
miRNA:   3'- -UUGUC-----CGAUGGCGGU--------UUCGUc-ACCGG- -5'
18607 3' -56 NC_004682.1 + 6085 0.67 0.543826
Target:  5'- cGGCGGGCUggugaGCCGUU--GGCAGaagacgaugcUGGCCc -3'
miRNA:   3'- -UUGUCCGA-----UGGCGGuuUCGUC----------ACCGG- -5'
18607 3' -56 NC_004682.1 + 43138 0.67 0.543826
Target:  5'- ---cGGCaGCCGCCAcgcuccgguccAGGCGGUcgucccGGCCu -3'
miRNA:   3'- uuguCCGaUGGCGGU-----------UUCGUCA------CCGG- -5'
18607 3' -56 NC_004682.1 + 10080 0.67 0.522103
Target:  5'- cGugGGGUgcCCGCCAGucgGGC--UGGCCg -3'
miRNA:   3'- -UugUCCGauGGCGGUU---UCGucACCGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.