miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18607 5' -56.9 NC_004682.1 + 5115 0.66 0.586253
Target:  5'- -gGucGACgccGCGCCGAuccUGGCGCgUGCu -3'
miRNA:   3'- uaCucCUGa--CGCGGUU---GCCGCGaACG- -5'
18607 5' -56.9 NC_004682.1 + 28062 0.66 0.586253
Target:  5'- gAUGGGGAgUGUGCCucccuCGGCGaCgaagacGCu -3'
miRNA:   3'- -UACUCCUgACGCGGuu---GCCGC-Gaa----CG- -5'
18607 5' -56.9 NC_004682.1 + 36439 0.66 0.586253
Target:  5'- uUGAuGGAgUGCagauaGCCGGCGGgCGUUUGg -3'
miRNA:   3'- uACU-CCUgACG-----CGGUUGCC-GCGAACg -5'
18607 5' -56.9 NC_004682.1 + 39264 0.66 0.564287
Target:  5'- gAUGGGGGCUcucacGCaCCAACuGcGCGCUUGa -3'
miRNA:   3'- -UACUCCUGA-----CGcGGUUG-C-CGCGAACg -5'
18607 5' -56.9 NC_004682.1 + 17268 0.67 0.521085
Target:  5'- -aGAuGGuCgGCGaCAACGGCGCUcUGCu -3'
miRNA:   3'- uaCU-CCuGaCGCgGUUGCCGCGA-ACG- -5'
18607 5' -56.9 NC_004682.1 + 7106 0.67 0.489548
Target:  5'- ---cGGGCcGCuaCGACGGCGCgaGCg -3'
miRNA:   3'- uacuCCUGaCGcgGUUGCCGCGaaCG- -5'
18607 5' -56.9 NC_004682.1 + 5279 0.67 0.489548
Target:  5'- cUGGGGcuGCUGCucacGCCGGCcccGGCGCagGCg -3'
miRNA:   3'- uACUCC--UGACG----CGGUUG---CCGCGaaCG- -5'
18607 5' -56.9 NC_004682.1 + 32127 0.68 0.469025
Target:  5'- -gGAGGGCUGC-CUucGCGGC-CUUGUc -3'
miRNA:   3'- uaCUCCUGACGcGGu-UGCCGcGAACG- -5'
18607 5' -56.9 NC_004682.1 + 41968 0.68 0.458931
Target:  5'- -gGGGGACcgUGaCGCCuACGGCGUcggGCc -3'
miRNA:   3'- uaCUCCUG--AC-GCGGuUGCCGCGaa-CG- -5'
18607 5' -56.9 NC_004682.1 + 32629 0.69 0.410288
Target:  5'- uUGAuGACguaGCGCCAugcGCGGUGgUUGCc -3'
miRNA:   3'- uACUcCUGa--CGCGGU---UGCCGCgAACG- -5'
18607 5' -56.9 NC_004682.1 + 23414 0.69 0.36498
Target:  5'- -cGAGaACgccagUGCGCCGACGGCGauugUGCc -3'
miRNA:   3'- uaCUCcUG-----ACGCGGUUGCCGCga--ACG- -5'
18607 5' -56.9 NC_004682.1 + 6345 0.7 0.356342
Target:  5'- --cGGGACUcccCGCCGacACGGCGCggGCg -3'
miRNA:   3'- uacUCCUGAc--GCGGU--UGCCGCGaaCG- -5'
18607 5' -56.9 NC_004682.1 + 15934 0.7 0.356342
Target:  5'- -aGGGGAUgGuCGCCAACGGCGa--GCc -3'
miRNA:   3'- uaCUCCUGaC-GCGGUUGCCGCgaaCG- -5'
18607 5' -56.9 NC_004682.1 + 41812 0.7 0.323249
Target:  5'- --cGGGACUcGCGCCAGCaGCGCguagGUc -3'
miRNA:   3'- uacUCCUGA-CGCGGUUGcCGCGaa--CG- -5'
18607 5' -56.9 NC_004682.1 + 42192 0.72 0.237955
Target:  5'- -cGAGGACcGCGCaGACGGCGgcgucaaucuuCUUGCc -3'
miRNA:   3'- uaCUCCUGaCGCGgUUGCCGC-----------GAACG- -5'
18607 5' -56.9 NC_004682.1 + 20929 0.72 0.237955
Target:  5'- --cAGGaACUGCGCCGgauCGGCGCguucgGCa -3'
miRNA:   3'- uacUCC-UGACGCGGUu--GCCGCGaa---CG- -5'
18607 5' -56.9 NC_004682.1 + 27726 0.73 0.231769
Target:  5'- cUGGuGACUGCGCCAcGCGGCGaccGCa -3'
miRNA:   3'- uACUcCUGACGCGGU-UGCCGCgaaCG- -5'
18607 5' -56.9 NC_004682.1 + 16937 1.09 0.00054
Target:  5'- gAUGAGGACUGCGCCAACGGCGCUUGCc -3'
miRNA:   3'- -UACUCCUGACGCGGUUGCCGCGAACG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.