Results 1 - 16 of 16 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18608 | 3' | -52.5 | NC_004682.1 | + | 16716 | 1.08 | 0.00201 |
Target: 5'- uCUACCAGACGAUCUGGGCUGACAACGc -3' miRNA: 3'- -GAUGGUCUGCUAGACCCGACUGUUGC- -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 6568 | 0.72 | 0.492974 |
Target: 5'- uCUugCAG-CGGUCacggguUGGGCUGAUAGCc -3' miRNA: 3'- -GAugGUCuGCUAG------ACCCGACUGUUGc -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 22642 | 0.71 | 0.557921 |
Target: 5'- -cGCCAGuacCGAgagCUGGGCcUGAuCAACGa -3' miRNA: 3'- gaUGGUCu--GCUa--GACCCG-ACU-GUUGC- -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 17327 | 0.69 | 0.66672 |
Target: 5'- -gGCCAGGCGuucgcgaagCUGGccccgcagcaggccGCUGGCGGCGg -3' miRNA: 3'- gaUGGUCUGCua-------GACC--------------CGACUGUUGC- -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 24335 | 0.68 | 0.703492 |
Target: 5'- aCUuCCGGGCaGAgCUGGGCUGcgugguCGACGg -3' miRNA: 3'- -GAuGGUCUG-CUaGACCCGACu-----GUUGC- -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 10038 | 0.68 | 0.725418 |
Target: 5'- ---aCGGugGcgCUcgggGGGCUGACGACa -3' miRNA: 3'- gaugGUCugCuaGA----CCCGACUGUUGc -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 19690 | 0.68 | 0.757546 |
Target: 5'- -gACCAGcCGAUCU-GGCUGAaGugGa -3' miRNA: 3'- gaUGGUCuGCUAGAcCCGACUgUugC- -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 9892 | 0.67 | 0.778313 |
Target: 5'- aCUACCGGAuggaguCGAUCUGGcGCgauccGuCGACGc -3' miRNA: 3'- -GAUGGUCU------GCUAGACC-CGa----CuGUUGC- -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 47242 | 0.67 | 0.778313 |
Target: 5'- uCUuCCGGGuCGAUCUGGGUccaGGCcACGg -3' miRNA: 3'- -GAuGGUCU-GCUAGACCCGa--CUGuUGC- -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 29730 | 0.67 | 0.812109 |
Target: 5'- gCUuCCGGGCGugguagucgacuccgGUCUGGGCUuGGCGAa- -3' miRNA: 3'- -GAuGGUCUGC---------------UAGACCCGA-CUGUUgc -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 4968 | 0.66 | 0.827248 |
Target: 5'- gUGCuCGGGCGGUCUGGaucGCc-ACAGCGg -3' miRNA: 3'- gAUG-GUCUGCUAGACC---CGacUGUUGC- -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 8970 | 0.66 | 0.827248 |
Target: 5'- -gGCCAGcucgcGCGGUCUGuGCUGGCccCGg -3' miRNA: 3'- gaUGGUC-----UGCUAGACcCGACUGuuGC- -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 15878 | 0.66 | 0.836433 |
Target: 5'- -gGCC-GugGAggaaggCUGGGCUGGCccgAACa -3' miRNA: 3'- gaUGGuCugCUa-----GACCCGACUG---UUGc -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 34852 | 0.66 | 0.854117 |
Target: 5'- ---gCAGACGAccucgUUGGGCUccccgacguugGACAGCGa -3' miRNA: 3'- gaugGUCUGCUa----GACCCGA-----------CUGUUGC- -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 49072 | 0.66 | 0.854117 |
Target: 5'- -gAUCAGGCuGAaggCUGGGCgUGACccGACGa -3' miRNA: 3'- gaUGGUCUG-CUa--GACCCG-ACUG--UUGC- -5' |
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18608 | 3' | -52.5 | NC_004682.1 | + | 19767 | 0.66 | 0.857539 |
Target: 5'- aCUACUGGGCGAgcaaggccgacauccUCUacGGGCUGGagAACGu -3' miRNA: 3'- -GAUGGUCUGCU---------------AGA--CCCGACUg-UUGC- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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