miRNA display CGI


Results 1 - 20 of 39 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18608 5' -57.9 NC_004682.1 + 10163 0.66 0.558586
Target:  5'- gUCAuCCGCaaccagaagAugGUCGACCuCGGAGcCg -3'
miRNA:   3'- aAGU-GGCGg--------UugCAGCUGG-GCCUCuG- -5'
18608 5' -57.9 NC_004682.1 + 15973 0.66 0.558586
Target:  5'- gUCGCUGuCCAACGUCGgggaGCCCaacGAGGu -3'
miRNA:   3'- aAGUGGC-GGUUGCAGC----UGGGc--CUCUg -5'
18608 5' -57.9 NC_004682.1 + 38638 0.66 0.558586
Target:  5'- gUCgACCGCCGuguUGaggaUCGGCUCGGuGACg -3'
miRNA:   3'- aAG-UGGCGGUu--GC----AGCUGGGCCuCUG- -5'
18608 5' -57.9 NC_004682.1 + 24826 0.66 0.558586
Target:  5'- --aACgCGUUggUGUCGGCCUGGaAGACc -3'
miRNA:   3'- aagUG-GCGGuuGCAGCUGGGCC-UCUG- -5'
18608 5' -57.9 NC_004682.1 + 1452 0.66 0.558586
Target:  5'- cUCGaCGCCAGCGgCGAgcccgucaacuuCCCGGcAGGCa -3'
miRNA:   3'- aAGUgGCGGUUGCaGCU------------GGGCC-UCUG- -5'
18608 5' -57.9 NC_004682.1 + 3314 0.66 0.547905
Target:  5'- --gGCaCGCacccCGUCGACCCaGAGACc -3'
miRNA:   3'- aagUG-GCGguu-GCAGCUGGGcCUCUG- -5'
18608 5' -57.9 NC_004682.1 + 47602 0.66 0.537289
Target:  5'- --gACgCGCUGGCGacCGGCCuCGGAGACc -3'
miRNA:   3'- aagUG-GCGGUUGCa-GCUGG-GCCUCUG- -5'
18608 5' -57.9 NC_004682.1 + 9333 0.66 0.537289
Target:  5'- ---gUCGCgAACGUCGcgcacaACCUGGAGAUg -3'
miRNA:   3'- aaguGGCGgUUGCAGC------UGGGCCUCUG- -5'
18608 5' -57.9 NC_004682.1 + 9126 0.66 0.537289
Target:  5'- aUCgACC-CCGGCGUgGACCCaGAGGu -3'
miRNA:   3'- aAG-UGGcGGUUGCAgCUGGGcCUCUg -5'
18608 5' -57.9 NC_004682.1 + 18990 0.66 0.526746
Target:  5'- gUUCAUCuUCAACGUCGGCUCGauGGACg -3'
miRNA:   3'- -AAGUGGcGGUUGCAGCUGGGCc-UCUG- -5'
18608 5' -57.9 NC_004682.1 + 2191 0.66 0.520457
Target:  5'- -aCAUCGCCuACGUCGACCagaccuucgcagaaGGcaAGGCg -3'
miRNA:   3'- aaGUGGCGGuUGCAGCUGGg-------------CC--UCUG- -5'
18608 5' -57.9 NC_004682.1 + 41402 0.66 0.516281
Target:  5'- aUCGCCuuGUCGGCGUCGuuguagccUCCGGuGACg -3'
miRNA:   3'- aAGUGG--CGGUUGCAGCu-------GGGCCuCUG- -5'
18608 5' -57.9 NC_004682.1 + 17955 0.67 0.485416
Target:  5'- cUCGCaGCguACGUCGACCCgacGGAG-Cu -3'
miRNA:   3'- aAGUGgCGguUGCAGCUGGG---CCUCuG- -5'
18608 5' -57.9 NC_004682.1 + 47605 0.67 0.485416
Target:  5'- -gCGCCGCCGAUGUCGcCCUGuGccGCg -3'
miRNA:   3'- aaGUGGCGGUUGCAGCuGGGC-CucUG- -5'
18608 5' -57.9 NC_004682.1 + 35234 0.67 0.485416
Target:  5'- -aCAUCcgaGCCAACGgcagCGGCCCcGAGGCc -3'
miRNA:   3'- aaGUGG---CGGUUGCa---GCUGGGcCUCUG- -5'
18608 5' -57.9 NC_004682.1 + 17995 0.67 0.484402
Target:  5'- --aACCGCCAGCGgucaaggaucugaUCGACgcgCCGG-GACg -3'
miRNA:   3'- aagUGGCGGUUGC-------------AGCUG---GGCCuCUG- -5'
18608 5' -57.9 NC_004682.1 + 47135 0.67 0.465335
Target:  5'- aUUCGCCGUCAGCGaCGAcuCCCGccguGGCg -3'
miRNA:   3'- -AAGUGGCGGUUGCaGCU--GGGCcu--CUG- -5'
18608 5' -57.9 NC_004682.1 + 36695 0.67 0.46236
Target:  5'- -gCGCCGCCcggaggaucgggagGACGaCGGCCUGGAcGCg -3'
miRNA:   3'- aaGUGGCGG--------------UUGCaGCUGGGCCUcUG- -5'
18608 5' -57.9 NC_004682.1 + 18027 0.68 0.43605
Target:  5'- -cCAUCGgUGGCGUUGuCCUGGGGGCg -3'
miRNA:   3'- aaGUGGCgGUUGCAGCuGGGCCUCUG- -5'
18608 5' -57.9 NC_004682.1 + 41979 0.68 0.43605
Target:  5'- -aCGCCuaCGGCGUCGGgCCGGcgcucGGACu -3'
miRNA:   3'- aaGUGGcgGUUGCAGCUgGGCC-----UCUG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.