miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18612 5' -51.4 NC_004682.1 + 15434 0.66 0.879266
Target:  5'- --cGAagGACGACgagGGCaagcagcgCGAAGAGGa -3'
miRNA:   3'- caaCUagCUGUUGa--CCGg-------GCUUCUCC- -5'
18612 5' -51.4 NC_004682.1 + 7163 0.66 0.879266
Target:  5'- --aGAUCGAgAAguucuucgcCUGGaccgaaggccacCCCGAAGAGGu -3'
miRNA:   3'- caaCUAGCUgUU---------GACC------------GGGCUUCUCC- -5'
18612 5' -51.4 NC_004682.1 + 6701 0.67 0.854521
Target:  5'- ----cUCGAUGACcGGCUCGAAGGGc -3'
miRNA:   3'- caacuAGCUGUUGaCCGGGCUUCUCc -5'
18612 5' -51.4 NC_004682.1 + 40088 0.67 0.854521
Target:  5'- --cGAgaggCGcUGugUGGCCCGcAGAGGg -3'
miRNA:   3'- caaCUa---GCuGUugACCGGGCuUCUCC- -5'
18612 5' -51.4 NC_004682.1 + 24239 0.67 0.854521
Target:  5'- --cGAUgGACAAC-GGCgCGAAGAacuGGg -3'
miRNA:   3'- caaCUAgCUGUUGaCCGgGCUUCU---CC- -5'
18612 5' -51.4 NC_004682.1 + 43864 0.67 0.827563
Target:  5'- ---aGUCGAUAGCUGGUCCGAu---- -3'
miRNA:   3'- caacUAGCUGUUGACCGGGCUucucc -5'
18612 5' -51.4 NC_004682.1 + 16020 0.68 0.778437
Target:  5'- --aGAUUG-CGGCU-GCCCGAaAGAGGa -3'
miRNA:   3'- caaCUAGCuGUUGAcCGGGCU-UCUCC- -5'
18612 5' -51.4 NC_004682.1 + 15628 0.69 0.756523
Target:  5'- uGUUGAUCGACGugUGcgagauCCUGAgcgagaucgcuacGGAGGg -3'
miRNA:   3'- -CAACUAGCUGUugACc-----GGGCU-------------UCUCC- -5'
18612 5' -51.4 NC_004682.1 + 16679 0.7 0.714343
Target:  5'- --cGggCGGCAGCggugaugGGCCUGGAGGGc -3'
miRNA:   3'- caaCuaGCUGUUGa------CCGGGCUUCUCc -5'
18612 5' -51.4 NC_004682.1 + 22105 0.71 0.658453
Target:  5'- --aGAUCGGCuaccGCUgggacaaggacGGCCCGAAGGGc -3'
miRNA:   3'- caaCUAGCUGu---UGA-----------CCGGGCUUCUCc -5'
18612 5' -51.4 NC_004682.1 + 574 0.71 0.624514
Target:  5'- -----cCGACGACUGGCCCGccauacGGAGa -3'
miRNA:   3'- caacuaGCUGUUGACCGGGCu-----UCUCc -5'
18612 5' -51.4 NC_004682.1 + 10471 0.72 0.590637
Target:  5'- -cUGAUCGA--GCUGGCCCagcGAGGc -3'
miRNA:   3'- caACUAGCUguUGACCGGGcuuCUCC- -5'
18612 5' -51.4 NC_004682.1 + 24894 0.73 0.51328
Target:  5'- -cUGAUCGACcGCaGGaCCCGGcuGGAGGc -3'
miRNA:   3'- caACUAGCUGuUGaCC-GGGCU--UCUCC- -5'
18612 5' -51.4 NC_004682.1 + 10829 0.77 0.322343
Target:  5'- --aGGUgGACGACUGGCCCGGuuuGGa -3'
miRNA:   3'- caaCUAgCUGUUGACCGGGCUucuCC- -5'
18612 5' -51.4 NC_004682.1 + 14859 1.11 0.001676
Target:  5'- uGUUGAUCGACAACUGGCCCGAAGAGGa -3'
miRNA:   3'- -CAACUAGCUGUUGACCGGGCUUCUCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.