Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18613 | 3' | -56.9 | NC_004682.1 | + | 45543 | 0.66 | 0.562689 |
|
Target: 5'- uUgGACCCGCcuGCGCcgGGGCcggcgUGAGCAGc -3' miRNA: 3'- uAgCUGGGUG--CGUGa-CCCG-----ACUUGUU- -5' |
|||||||
| 18613 | 3' | -56.9 | NC_004682.1 | + | 20201 | 0.66 | 0.52993 |
|
Target: 5'- gGUCGACCgCACGaCGgaGGGCUucACGg -3' miRNA: 3'- -UAGCUGG-GUGC-GUgaCCCGAcuUGUu -5' |
|||||||
| 18613 | 3' | -56.9 | NC_004682.1 | + | 26314 | 0.66 | 0.508481 |
|
Target: 5'- -cCGACCCcgaGCAUUGGGUUG-GCGGu -3' miRNA: 3'- uaGCUGGGug-CGUGACCCGACuUGUU- -5' |
|||||||
| 18613 | 3' | -56.9 | NC_004682.1 | + | 9194 | 0.67 | 0.497894 |
|
Target: 5'- gAUCGACCCGCGCACccgacaGGUgauGCGAg -3' miRNA: 3'- -UAGCUGGGUGCGUGac----CCGacuUGUU- -5' |
|||||||
| 18613 | 3' | -56.9 | NC_004682.1 | + | 36874 | 0.67 | 0.496841 |
|
Target: 5'- cUCGAUggCCAuCGCAUUGGGCgcuucgagguugaUGAACGAg -3' miRNA: 3'- uAGCUG--GGU-GCGUGACCCG-------------ACUUGUU- -5' |
|||||||
| 18613 | 3' | -56.9 | NC_004682.1 | + | 18271 | 0.67 | 0.487407 |
|
Target: 5'- uGUCgGugCCGCGCAgaGGGUcgucgGAGCAGu -3' miRNA: 3'- -UAG-CugGGUGCGUgaCCCGa----CUUGUU- -5' |
|||||||
| 18613 | 3' | -56.9 | NC_004682.1 | + | 17966 | 0.69 | 0.379975 |
|
Target: 5'- cGUCGACCCgACGgaGCUGGGCguccacGAACc- -3' miRNA: 3'- -UAGCUGGG-UGCg-UGACCCGa-----CUUGuu -5' |
|||||||
| 18613 | 3' | -56.9 | NC_004682.1 | + | 29745 | 0.7 | 0.320367 |
|
Target: 5'- aGUCGACUC-CGguCUGGGCUuGGCGAa -3' miRNA: 3'- -UAGCUGGGuGCguGACCCGAcUUGUU- -5' |
|||||||
| 18613 | 3' | -56.9 | NC_004682.1 | + | 14670 | 1.04 | 0.001147 |
|
Target: 5'- cAUCGACCCACGCACUGGGCUGAACAAc -3' miRNA: 3'- -UAGCUGGGUGCGUGACCCGACUUGUU- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home