miRNA display CGI


Results 1 - 10 of 10 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18615 3' -56 NC_004682.1 + 48918 0.66 0.653629
Target:  5'- aGGuGGGUaggucgucguagUCGGCCacCUGGCCgUCGAu -3'
miRNA:   3'- gUC-CCUA------------AGCCGGaaGACUGGgAGCU- -5'
18615 3' -56 NC_004682.1 + 31104 0.66 0.631609
Target:  5'- cCGGGGAUguaCGGCUcagCgGGCuCCUCGGu -3'
miRNA:   3'- -GUCCCUAa--GCCGGaa-GaCUG-GGAGCU- -5'
18615 3' -56 NC_004682.1 + 36972 0.66 0.631609
Target:  5'- uCGGuGGAUcggaaccgucUCGGCCUUgacgugCUGACCaUCGAg -3'
miRNA:   3'- -GUC-CCUA----------AGCCGGAA------GACUGGgAGCU- -5'
18615 3' -56 NC_004682.1 + 12392 0.66 0.620594
Target:  5'- uGGGGccagaUCGGCggUCUGuCCUUCGAc -3'
miRNA:   3'- gUCCCua---AGCCGgaAGACuGGGAGCU- -5'
18615 3' -56 NC_004682.1 + 43159 0.67 0.576731
Target:  5'- cCAGGcGGUcguccCGGCCUUCUuGGCgaCCUCGGc -3'
miRNA:   3'- -GUCC-CUAa----GCCGGAAGA-CUG--GGAGCU- -5'
18615 3' -56 NC_004682.1 + 43120 0.68 0.555038
Target:  5'- cCGGGGAUcUUGGUCaggUUG-CCCUCGAu -3'
miRNA:   3'- -GUCCCUA-AGCCGGaa-GACuGGGAGCU- -5'
18615 3' -56 NC_004682.1 + 41361 0.7 0.441506
Target:  5'- -cGGGcacaCGGCUgaUCUGACCCUUGAc -3'
miRNA:   3'- guCCCuaa-GCCGGa-AGACUGGGAGCU- -5'
18615 3' -56 NC_004682.1 + 8416 0.7 0.42227
Target:  5'- gAGGaGUUCGGCCUg-UGAuCCCUCGu -3'
miRNA:   3'- gUCCcUAAGCCGGAagACU-GGGAGCu -5'
18615 3' -56 NC_004682.1 + 39364 0.7 0.421321
Target:  5'- cCGGGGAUUUcgcuggGGCCUUacccagcagugccUUGACCCUCu- -3'
miRNA:   3'- -GUCCCUAAG------CCGGAA-------------GACUGGGAGcu -5'
18615 3' -56 NC_004682.1 + 13826 1.08 0.000877
Target:  5'- gCAGGGAUUCGGCCUUCUGACCCUCGAu -3'
miRNA:   3'- -GUCCCUAAGCCGGAAGACUGGGAGCU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.