miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18615 5' -54.3 NC_004682.1 + 15849 0.66 0.801948
Target:  5'- uCGcUgGAGGUCGAuGACGaGUUCUGGguggCCg -3'
miRNA:   3'- -GC-AgUUCCGGCU-CUGC-CAAGGCUa---GG- -5'
18615 5' -54.3 NC_004682.1 + 9526 0.66 0.801948
Target:  5'- gCGUCAAGGgCGAGGagcUGGgcgUCGAcCCc -3'
miRNA:   3'- -GCAGUUCCgGCUCU---GCCaa-GGCUaGG- -5'
18615 5' -54.3 NC_004682.1 + 25490 0.66 0.792306
Target:  5'- gCGUUggGGCUGuAGAUcaGGUcCCaGUCCa -3'
miRNA:   3'- -GCAGuuCCGGC-UCUG--CCAaGGcUAGG- -5'
18615 5' -54.3 NC_004682.1 + 1543 0.66 0.772535
Target:  5'- uCGUCGGGGCCGuGGCca---CGAUCa -3'
miRNA:   3'- -GCAGUUCCGGCuCUGccaagGCUAGg -5'
18615 5' -54.3 NC_004682.1 + 37377 0.66 0.762429
Target:  5'- aGcCAGGGCCGGGGCGua-CCGGgugagguacUCCc -3'
miRNA:   3'- gCaGUUCCGGCUCUGCcaaGGCU---------AGG- -5'
18615 5' -54.3 NC_004682.1 + 26720 0.67 0.740787
Target:  5'- uGUCGAGGCCcuuccccuuccccGAGG-GGUgauccaCGAUCCu -3'
miRNA:   3'- gCAGUUCCGG-------------CUCUgCCAag----GCUAGG- -5'
18615 5' -54.3 NC_004682.1 + 17043 0.67 0.731359
Target:  5'- aCGaCGAGGCCcAGGCGGcucccgCCGAggCCc -3'
miRNA:   3'- -GCaGUUCCGGcUCUGCCaa----GGCUa-GG- -5'
18615 5' -54.3 NC_004682.1 + 22345 0.67 0.731359
Target:  5'- uCGcCAAGaCCGuGGCGa-UCCGAUCCg -3'
miRNA:   3'- -GCaGUUCcGGCuCUGCcaAGGCUAGG- -5'
18615 5' -54.3 NC_004682.1 + 2380 0.67 0.709064
Target:  5'- gGUCccgaAGGGCCacaggguGAGACGGgaCCGcaggGUCCg -3'
miRNA:   3'- gCAG----UUCCGG-------CUCUGCCaaGGC----UAGG- -5'
18615 5' -54.3 NC_004682.1 + 41185 0.67 0.699402
Target:  5'- gCGUCGAGGgCGuccACGaaGUUCCGAagcUCCg -3'
miRNA:   3'- -GCAGUUCCgGCuc-UGC--CAAGGCU---AGG- -5'
18615 5' -54.3 NC_004682.1 + 18005 0.67 0.696169
Target:  5'- gGUCAAGgaucugaucgacgcGCCGGGACGcGgcuacUUCCGcgCCa -3'
miRNA:   3'- gCAGUUC--------------CGGCUCUGC-C-----AAGGCuaGG- -5'
18615 5' -54.3 NC_004682.1 + 8385 0.68 0.675579
Target:  5'- aCGUCGaccagugGGGCCGGGAC--UUCCgcaagaaGAUCCa -3'
miRNA:   3'- -GCAGU-------UCCGGCUCUGccAAGG-------CUAGG- -5'
18615 5' -54.3 NC_004682.1 + 38114 0.68 0.666861
Target:  5'- aGUUGAGGCCGAcGCGGagCaCGuuGUCCu -3'
miRNA:   3'- gCAGUUCCGGCUcUGCCaaG-GC--UAGG- -5'
18615 5' -54.3 NC_004682.1 + 14999 0.68 0.644988
Target:  5'- gCGUCGGuGcGCCGGGACGacg-CGAUCCa -3'
miRNA:   3'- -GCAGUU-C-CGGCUCUGCcaagGCUAGG- -5'
18615 5' -54.3 NC_004682.1 + 24797 0.69 0.623067
Target:  5'- aGUCAGGGCCacaaucGAccgccuacGGCGGgagUCCGAcgCCg -3'
miRNA:   3'- gCAGUUCCGG------CU--------CUGCCa--AGGCUa-GG- -5'
18615 5' -54.3 NC_004682.1 + 28789 0.69 0.601179
Target:  5'- cCGUC-AGGCCGAGAgCGGacagggCGAUCa -3'
miRNA:   3'- -GCAGuUCCGGCUCU-GCCaag---GCUAGg -5'
18615 5' -54.3 NC_004682.1 + 4387 0.69 0.590269
Target:  5'- gCGUCAAGGCCcagGAGGacaaGGUgCUGGagUCCg -3'
miRNA:   3'- -GCAGUUCCGG---CUCUg---CCAaGGCU--AGG- -5'
18615 5' -54.3 NC_004682.1 + 11821 0.69 0.590269
Target:  5'- cCGgCGAGGCCGAG-CGcaagCCGAUCa -3'
miRNA:   3'- -GCaGUUCCGGCUCuGCcaa-GGCUAGg -5'
18615 5' -54.3 NC_004682.1 + 18226 0.7 0.557783
Target:  5'- aCGUCAucaAGGCCcgcuggcauGAGGCGGcugacgCCGAgaUCCg -3'
miRNA:   3'- -GCAGU---UCCGG---------CUCUGCCaa----GGCU--AGG- -5'
18615 5' -54.3 NC_004682.1 + 13133 0.7 0.557783
Target:  5'- cCGUCGAGGCuCcAGAUGGUUUgGAggaCCu -3'
miRNA:   3'- -GCAGUUCCG-GcUCUGCCAAGgCUa--GG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.