Results 21 - 27 of 27 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18615 | 5' | -54.3 | NC_004682.1 | + | 7855 | 0.71 | 0.484355 |
Target: 5'- -aUCAAGGgCGAGcGCGGcagaUUCCGGUUCg -3' miRNA: 3'- gcAGUUCCgGCUC-UGCC----AAGGCUAGG- -5' |
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18615 | 5' | -54.3 | NC_004682.1 | + | 41253 | 0.72 | 0.464213 |
Target: 5'- aGUCGAGcCCG-GACGGgUCCGA-CCg -3' miRNA: 3'- gCAGUUCcGGCuCUGCCaAGGCUaGG- -5' |
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18615 | 5' | -54.3 | NC_004682.1 | + | 40009 | 0.73 | 0.370746 |
Target: 5'- gCG-CGAGGCCGAGGCccucGGUggCCGA-CCg -3' miRNA: 3'- -GCaGUUCCGGCUCUG----CCAa-GGCUaGG- -5' |
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18615 | 5' | -54.3 | NC_004682.1 | + | 39036 | 0.74 | 0.36213 |
Target: 5'- aGUCAuuccGGCCuugucGAGGCGGUUCCcauUCCg -3' miRNA: 3'- gCAGUu---CCGG-----CUCUGCCAAGGcu-AGG- -5' |
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18615 | 5' | -54.3 | NC_004682.1 | + | 31251 | 0.75 | 0.313406 |
Target: 5'- gGcCAGGGCCacggGAGugGGUUCgGAUCg -3' miRNA: 3'- gCaGUUCCGG----CUCugCCAAGgCUAGg -5' |
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18615 | 5' | -54.3 | NC_004682.1 | + | 39042 | 0.77 | 0.225279 |
Target: 5'- gGUCcacGAcGCCGAGACGGcaCCGGUCCa -3' miRNA: 3'- gCAG---UUcCGGCUCUGCCaaGGCUAGG- -5' |
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18615 | 5' | -54.3 | NC_004682.1 | + | 13861 | 1.13 | 0.000699 |
Target: 5'- aCGUCAAGGCCGAGACGGUUCCGAUCCa -3' miRNA: 3'- -GCAGUUCCGGCUCUGCCAAGGCUAGG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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