miRNA display CGI


Results 21 - 27 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18615 5' -54.3 NC_004682.1 + 7855 0.71 0.484355
Target:  5'- -aUCAAGGgCGAGcGCGGcagaUUCCGGUUCg -3'
miRNA:   3'- gcAGUUCCgGCUC-UGCC----AAGGCUAGG- -5'
18615 5' -54.3 NC_004682.1 + 41253 0.72 0.464213
Target:  5'- aGUCGAGcCCG-GACGGgUCCGA-CCg -3'
miRNA:   3'- gCAGUUCcGGCuCUGCCaAGGCUaGG- -5'
18615 5' -54.3 NC_004682.1 + 40009 0.73 0.370746
Target:  5'- gCG-CGAGGCCGAGGCccucGGUggCCGA-CCg -3'
miRNA:   3'- -GCaGUUCCGGCUCUG----CCAa-GGCUaGG- -5'
18615 5' -54.3 NC_004682.1 + 39036 0.74 0.36213
Target:  5'- aGUCAuuccGGCCuugucGAGGCGGUUCCcauUCCg -3'
miRNA:   3'- gCAGUu---CCGG-----CUCUGCCAAGGcu-AGG- -5'
18615 5' -54.3 NC_004682.1 + 31251 0.75 0.313406
Target:  5'- gGcCAGGGCCacggGAGugGGUUCgGAUCg -3'
miRNA:   3'- gCaGUUCCGG----CUCugCCAAGgCUAGg -5'
18615 5' -54.3 NC_004682.1 + 39042 0.77 0.225279
Target:  5'- gGUCcacGAcGCCGAGACGGcaCCGGUCCa -3'
miRNA:   3'- gCAG---UUcCGGCUCUGCCaaGGCUAGG- -5'
18615 5' -54.3 NC_004682.1 + 13861 1.13 0.000699
Target:  5'- aCGUCAAGGCCGAGACGGUUCCGAUCCa -3'
miRNA:   3'- -GCAGUUCCGGCUCUGCCAAGGCUAGG- -5'
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.