miRNA display CGI


Results 1 - 14 of 14 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18616 3' -52.2 NC_004682.1 + 14671 0.66 0.851367
Target:  5'- --aUCGACcca--CGCACUGGGCUGa -3'
miRNA:   3'- ucaAGUUGuucuaGCGUGGCCCGACc -5'
18616 3' -52.2 NC_004682.1 + 42706 0.66 0.850496
Target:  5'- --cUUggUGAGGggcugaaUCGUGCUGGGCUGGc -3'
miRNA:   3'- ucaAGuuGUUCU-------AGCGUGGCCCGACC- -5'
18616 3' -52.2 NC_004682.1 + 1796 0.66 0.842553
Target:  5'- ---gCAGCAAGAUCuGCuACgCGGGCaaccUGGa -3'
miRNA:   3'- ucaaGUUGUUCUAG-CG-UG-GCCCG----ACC- -5'
18616 3' -52.2 NC_004682.1 + 27179 0.67 0.814758
Target:  5'- --cUCGGCGAcccacuUCGCGCCGGucuccuGCUGGg -3'
miRNA:   3'- ucaAGUUGUUcu----AGCGUGGCC------CGACC- -5'
18616 3' -52.2 NC_004682.1 + 15205 0.67 0.814758
Target:  5'- uGUUCAAUugcuGGGUC---UCGGGCUGGa -3'
miRNA:   3'- uCAAGUUGu---UCUAGcguGGCCCGACC- -5'
18616 3' -52.2 NC_004682.1 + 19482 0.68 0.754037
Target:  5'- ----gGGCAAGAUC-CACCGGGUcgucaUGGu -3'
miRNA:   3'- ucaagUUGUUCUAGcGUGGCCCG-----ACC- -5'
18616 3' -52.2 NC_004682.1 + 24386 0.68 0.732621
Target:  5'- ----gAGCAAGAUCgGCACgaCGGuGCUGGa -3'
miRNA:   3'- ucaagUUGUUCUAG-CGUG--GCC-CGACC- -5'
18616 3' -52.2 NC_004682.1 + 14783 0.69 0.681917
Target:  5'- aAGUUCAACGgcaugggcgguucggAGAU-GUACCGGGCg-- -3'
miRNA:   3'- -UCAAGUUGU---------------UCUAgCGUGGCCCGacc -5'
18616 3' -52.2 NC_004682.1 + 24511 0.7 0.654969
Target:  5'- --aUCAGCcAGGUCGgcgcggacUACCgGGGCUGGg -3'
miRNA:   3'- ucaAGUUGuUCUAGC--------GUGG-CCCGACC- -5'
18616 3' -52.2 NC_004682.1 + 9672 0.71 0.580646
Target:  5'- --cUCGACGcgcuGGAUCGCaaggcugccgcguacACCGGGCUGc -3'
miRNA:   3'- ucaAGUUGU----UCUAGCG---------------UGGCCCGACc -5'
18616 3' -52.2 NC_004682.1 + 2294 0.71 0.576177
Target:  5'- gGGUUCAGCcuGcgcUCGCugCGGGCUc- -3'
miRNA:   3'- -UCAAGUUGuuCu--AGCGugGCCCGAcc -5'
18616 3' -52.2 NC_004682.1 + 47740 0.74 0.408684
Target:  5'- ---cCGGCGAuGGUCGCgguggugggguaGCCGGGCUGGc -3'
miRNA:   3'- ucaaGUUGUU-CUAGCG------------UGGCCCGACC- -5'
18616 3' -52.2 NC_004682.1 + 17307 0.75 0.354065
Target:  5'- cAGUUCAACGAGAUgGUgaACCGGGUc-- -3'
miRNA:   3'- -UCAAGUUGUUCUAgCG--UGGCCCGacc -5'
18616 3' -52.2 NC_004682.1 + 13557 1.11 0.001451
Target:  5'- gAGUUCAACAAGAUCGCACCGGGCUGGu -3'
miRNA:   3'- -UCAAGUUGUUCUAGCGUGGCCCGACC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.