miRNA display CGI


Results 1 - 20 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18617 3' -53.4 NC_004682.1 + 736 0.68 0.690777
Target:  5'- --aCGGCAagaagucaUCCGCuGAGGGCAacGCC-CGg -3'
miRNA:   3'- caaGCCGU--------AGGUG-CUUCCGU--UGGuGC- -5'
18617 3' -53.4 NC_004682.1 + 3177 0.74 0.34011
Target:  5'- --aCGGCGggCCAgGGcgcGGGCAACCGCGu -3'
miRNA:   3'- caaGCCGUa-GGUgCU---UCCGUUGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 3658 0.66 0.786653
Target:  5'- cGUUCGGagGUCUGaccgaguacacCGAAGGCGagcugaccGCCACGg -3'
miRNA:   3'- -CAAGCCg-UAGGU-----------GCUUCCGU--------UGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 4327 0.66 0.763092
Target:  5'- aGUUCGGCAagCACGuugagccgcucaccAAGGCGcuggugACCGCc -3'
miRNA:   3'- -CAAGCCGUagGUGC--------------UUCCGU------UGGUGc -5'
18617 3' -53.4 NC_004682.1 + 7282 0.68 0.657325
Target:  5'- --aCGGCAacuacgucuaCCGCGAGGGCAuccugcGCCGCc -3'
miRNA:   3'- caaGCCGUa---------GGUGCUUCCGU------UGGUGc -5'
18617 3' -53.4 NC_004682.1 + 7598 0.67 0.734499
Target:  5'- -cUCGucccccGCAUCgGuCGAAGGUAACCGCc -3'
miRNA:   3'- caAGC------CGUAGgU-GCUUCCGUUGGUGc -5'
18617 3' -53.4 NC_004682.1 + 8519 0.71 0.481655
Target:  5'- -aUCGaGCAagaggucuUCCACGAcGGCAACC-CGg -3'
miRNA:   3'- caAGC-CGU--------AGGUGCUuCCGUUGGuGC- -5'
18617 3' -53.4 NC_004682.1 + 8673 0.66 0.786653
Target:  5'- cGUUCGGCGcgagacaggacuUCCugAUGAguaAGcGCAACCGCa -3'
miRNA:   3'- -CAAGCCGU------------AGG--UGCU---UC-CGUUGGUGc -5'
18617 3' -53.4 NC_004682.1 + 9136 0.7 0.566707
Target:  5'- -gUCGGCcagggcgGUgCGUGAGGGCGACCugGg -3'
miRNA:   3'- caAGCCG-------UAgGUGCUUCCGUUGGugC- -5'
18617 3' -53.4 NC_004682.1 + 9520 0.67 0.734499
Target:  5'- uGUUCGGCGUCaaggGCGAggagcuGGGCGucgACCcCGa -3'
miRNA:   3'- -CAAGCCGUAGg---UGCU------UCCGU---UGGuGC- -5'
18617 3' -53.4 NC_004682.1 + 9946 0.72 0.431122
Target:  5'- --cCGGCAgCCGCGAcuGGGUcgcccgGACCACGa -3'
miRNA:   3'- caaGCCGUaGGUGCU--UCCG------UUGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 10101 0.66 0.776509
Target:  5'- uGUUCGGUA-CCGacccguccggUGGAGGUAACC-CGg -3'
miRNA:   3'- -CAAGCCGUaGGU----------GCUUCCGUUGGuGC- -5'
18617 3' -53.4 NC_004682.1 + 10269 0.71 0.481655
Target:  5'- --cCGGCAUCC-CGGucGuCAACCACGg -3'
miRNA:   3'- caaGCCGUAGGuGCUucC-GUUGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 12272 0.67 0.701826
Target:  5'- -gUCGGCGcgaUCCGUGAGGGCcgcauCCugGg -3'
miRNA:   3'- caAGCCGU---AGGUGCUUCCGuu---GGugC- -5'
18617 3' -53.4 NC_004682.1 + 12336 0.66 0.796629
Target:  5'- --aCGGCA-CCGuu--GGCAACCGCGu -3'
miRNA:   3'- caaGCCGUaGGUgcuuCCGUUGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 12401 0.67 0.755767
Target:  5'- -gUgGGCGUgCCAgGAGcacaggcguGGCAGCCGCa -3'
miRNA:   3'- caAgCCGUA-GGUgCUU---------CCGUUGGUGc -5'
18617 3' -53.4 NC_004682.1 + 12667 0.68 0.646111
Target:  5'- -cUCGGCuggaC-CGAGGGCGuCCACGa -3'
miRNA:   3'- caAGCCGuag-GuGCUUCCGUuGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 13324 0.67 0.755767
Target:  5'- --aCuGCGUCCACGAcuGGCGAauCCACu -3'
miRNA:   3'- caaGcCGUAGGUGCUu-CCGUU--GGUGc -5'
18617 3' -53.4 NC_004682.1 + 13414 1.1 0.001219
Target:  5'- cGUUCGGCAUCCACGAAGGCAACCACGa -3'
miRNA:   3'- -CAAGCCGUAGGUGCUUCCGUUGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 13606 0.67 0.745193
Target:  5'- --gCGGCAUCCggcugaaccagaACGcGGGCAG-CACGg -3'
miRNA:   3'- caaGCCGUAGG------------UGCuUCCGUUgGUGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.