miRNA display CGI


Results 21 - 40 of 41 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18617 3' -53.4 NC_004682.1 + 35355 0.67 0.745193
Target:  5'- -gUgGGUgucgaucagAUCCACcAGGGCAGCCGCc -3'
miRNA:   3'- caAgCCG---------UAGGUGcUUCCGUUGGUGc -5'
18617 3' -53.4 NC_004682.1 + 16667 0.67 0.745193
Target:  5'- --gCGGCAUgCGCucGGGCGGCaGCGg -3'
miRNA:   3'- caaGCCGUAgGUGcuUCCGUUGgUGC- -5'
18617 3' -53.4 NC_004682.1 + 7598 0.67 0.734499
Target:  5'- -cUCGucccccGCAUCgGuCGAAGGUAACCGCc -3'
miRNA:   3'- caAGC------CGUAGgU-GCUUCCGUUGGUGc -5'
18617 3' -53.4 NC_004682.1 + 9520 0.67 0.734499
Target:  5'- uGUUCGGCGUCaaggGCGAggagcuGGGCGucgACCcCGa -3'
miRNA:   3'- -CAAGCCGUAGg---UGCU------UCCGU---UGGuGC- -5'
18617 3' -53.4 NC_004682.1 + 12272 0.67 0.701826
Target:  5'- -gUCGGCGcgaUCCGUGAGGGCcgcauCCugGg -3'
miRNA:   3'- caAGCCGU---AGGUGCUUCCGuu---GGugC- -5'
18617 3' -53.4 NC_004682.1 + 736 0.68 0.690777
Target:  5'- --aCGGCAagaagucaUCCGCuGAGGGCAacGCC-CGg -3'
miRNA:   3'- caaGCCGU--------AGGUG-CUUCCGU--UGGuGC- -5'
18617 3' -53.4 NC_004682.1 + 7282 0.68 0.657325
Target:  5'- --aCGGCAacuacgucuaCCGCGAGGGCAuccugcGCCGCc -3'
miRNA:   3'- caaGCCGUa---------GGUGCUUCCGU------UGGUGc -5'
18617 3' -53.4 NC_004682.1 + 41164 0.68 0.657325
Target:  5'- --gCGGCAgccuugcgaUCCAgcgcguCGAGGGCGuCCACGa -3'
miRNA:   3'- caaGCCGU---------AGGU------GCUUCCGUuGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 36760 0.68 0.646111
Target:  5'- cUUCGGC-UCCaggGCGAGGGCcuuguCCACc -3'
miRNA:   3'- cAAGCCGuAGG---UGCUUCCGuu---GGUGc -5'
18617 3' -53.4 NC_004682.1 + 12667 0.68 0.646111
Target:  5'- -cUCGGCuggaC-CGAGGGCGuCCACGa -3'
miRNA:   3'- caAGCCGuag-GuGCUUCCGUuGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 42750 0.69 0.634883
Target:  5'- cGUUCGGUgagAUCCACGAauccucauGGGCGuugAUCugGu -3'
miRNA:   3'- -CAAGCCG---UAGGUGCU--------UCCGU---UGGugC- -5'
18617 3' -53.4 NC_004682.1 + 37249 0.69 0.623653
Target:  5'- -cUCGGCGUCCcaggaGCGcGGG-AACCGCa -3'
miRNA:   3'- caAGCCGUAGG-----UGCuUCCgUUGGUGc -5'
18617 3' -53.4 NC_004682.1 + 9136 0.7 0.566707
Target:  5'- -gUCGGCcagggcgGUgCGUGAGGGCGACCugGg -3'
miRNA:   3'- caAGCCG-------UAgGUGCUUCCGUUGGugC- -5'
18617 3' -53.4 NC_004682.1 + 16079 0.71 0.481655
Target:  5'- --gCGGCGUUCGCGcacggcaacGGCAGCUACGa -3'
miRNA:   3'- caaGCCGUAGGUGCuu-------CCGUUGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 8519 0.71 0.481655
Target:  5'- -aUCGaGCAagaggucuUCCACGAcGGCAACC-CGg -3'
miRNA:   3'- caAGC-CGU--------AGGUGCUuCCGUUGGuGC- -5'
18617 3' -53.4 NC_004682.1 + 10269 0.71 0.481655
Target:  5'- --cCGGCAUCC-CGGucGuCAACCACGg -3'
miRNA:   3'- caaGCCGUAGGuGCUucC-GUUGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 50196 0.72 0.440983
Target:  5'- -cUCGGUcgCCugGGugAGGCAACCGg- -3'
miRNA:   3'- caAGCCGuaGGugCU--UCCGUUGGUgc -5'
18617 3' -53.4 NC_004682.1 + 9946 0.72 0.431122
Target:  5'- --cCGGCAgCCGCGAcuGGGUcgcccgGACCACGa -3'
miRNA:   3'- caaGCCGUaGGUGCU--UCCG------UUGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 3177 0.74 0.34011
Target:  5'- --aCGGCGggCCAgGGcgcGGGCAACCGCGu -3'
miRNA:   3'- caaGCCGUa-GGUgCU---UCCGUUGGUGC- -5'
18617 3' -53.4 NC_004682.1 + 14902 0.78 0.191326
Target:  5'- uGUUCGGCGUCUcggcuGCGAGcGGCGACC-CGa -3'
miRNA:   3'- -CAAGCCGUAGG-----UGCUU-CCGUUGGuGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.