miRNA display CGI


Results 1 - 20 of 50 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18618 3' -53.4 NC_004682.1 + 4449 0.66 0.808001
Target:  5'- cGGGGcGACAAGGagcgcGCUGCucuGGCUcUCCGCg -3'
miRNA:   3'- -CUCC-UUGUUCU-----UGAUG---CCGGuGGGCG- -5'
18618 3' -53.4 NC_004682.1 + 3519 0.66 0.808001
Target:  5'- cGAGGAgacGCGGcAGCgGCuGGCCaaggACCCGCu -3'
miRNA:   3'- -CUCCU---UGUUcUUGaUG-CCGG----UGGGCG- -5'
18618 3' -53.4 NC_004682.1 + 4882 0.66 0.808001
Target:  5'- -cGGaGugAAGGGCU-CGGUgaGCCCGCg -3'
miRNA:   3'- cuCC-UugUUCUUGAuGCCGg-UGGGCG- -5'
18618 3' -53.4 NC_004682.1 + 3423 0.66 0.798241
Target:  5'- aAGGGACuGAGGuucgACGGCC-CCgGCg -3'
miRNA:   3'- cUCCUUG-UUCUuga-UGCCGGuGGgCG- -5'
18618 3' -53.4 NC_004682.1 + 16332 0.66 0.798241
Target:  5'- -cGGcAugAAGGACUGgGGCCGCgCCc- -3'
miRNA:   3'- cuCC-UugUUCUUGAUgCCGGUG-GGcg -5'
18618 3' -53.4 NC_004682.1 + 29375 0.66 0.798241
Target:  5'- uGGGGAGgucccCAGGAACcACGGCguguagUACUCGCc -3'
miRNA:   3'- -CUCCUU-----GUUCUUGaUGCCG------GUGGGCG- -5'
18618 3' -53.4 NC_004682.1 + 7301 0.66 0.789302
Target:  5'- cGAGGGcauccugcgccgccuCAAGGGCUGgGGCaaggACCCGUu -3'
miRNA:   3'- -CUCCUu--------------GUUCUUGAUgCCGg---UGGGCG- -5'
18618 3' -53.4 NC_004682.1 + 47303 0.66 0.7883
Target:  5'- cAGGAcuaGCGGGucCU-UGGCCAgCCGCu -3'
miRNA:   3'- cUCCU---UGUUCuuGAuGCCGGUgGGCG- -5'
18618 3' -53.4 NC_004682.1 + 47962 0.66 0.772049
Target:  5'- cGAGGAACAGGcaguucgccgggauGCUguaggugaACGcGCCugCCGUc -3'
miRNA:   3'- -CUCCUUGUUCu-------------UGA--------UGC-CGGugGGCG- -5'
18618 3' -53.4 NC_004682.1 + 9210 0.66 0.767924
Target:  5'- ---cGACAGGugaUGCGaGCCAUCCGCg -3'
miRNA:   3'- cuccUUGUUCuugAUGC-CGGUGGGCG- -5'
18618 3' -53.4 NC_004682.1 + 42457 0.66 0.767924
Target:  5'- uGGGGAugAacuggcuggccGGGGucggccuccCUGCGGCCACCUcaGCg -3'
miRNA:   3'- -CUCCUugU-----------UCUU---------GAUGCCGGUGGG--CG- -5'
18618 3' -53.4 NC_004682.1 + 46279 0.67 0.757511
Target:  5'- cGAGcGAACGcGGcgUUGCGGCCAUCCc- -3'
miRNA:   3'- -CUC-CUUGU-UCuuGAUGCCGGUGGGcg -5'
18618 3' -53.4 NC_004682.1 + 34751 0.67 0.746966
Target:  5'- -cGGGACAAcccGAACUgagauGCgaccgacuuccuGGCCGCCUGCu -3'
miRNA:   3'- cuCCUUGUU---CUUGA-----UG------------CCGGUGGGCG- -5'
18618 3' -53.4 NC_004682.1 + 33624 0.67 0.725523
Target:  5'- cAGGAACGAcugcguGAACUGguUGGCCGCaggCUGCa -3'
miRNA:   3'- cUCCUUGUU------CUUGAU--GCCGGUG---GGCG- -5'
18618 3' -53.4 NC_004682.1 + 12711 0.67 0.725523
Target:  5'- cGAGuGAACGAGGACaACGuGCU--CCGCg -3'
miRNA:   3'- -CUC-CUUGUUCUUGaUGC-CGGugGGCG- -5'
18618 3' -53.4 NC_004682.1 + 42736 0.67 0.725523
Target:  5'- cGGGAACGGGGuucGCgACGGCUgggucaggacguGCCaCGCg -3'
miRNA:   3'- cUCCUUGUUCU---UGaUGCCGG------------UGG-GCG- -5'
18618 3' -53.4 NC_004682.1 + 16624 0.67 0.725523
Target:  5'- cGAGGugauCGAGcACUACGGCCAggacucugagucCCUGg -3'
miRNA:   3'- -CUCCuu--GUUCuUGAUGCCGGU------------GGGCg -5'
18618 3' -53.4 NC_004682.1 + 13830 0.67 0.72444
Target:  5'- aAGGAGCGAGGccggaagGCcgaGGCCaaccuggcacagGCCCGCg -3'
miRNA:   3'- cUCCUUGUUCU-------UGaugCCGG------------UGGGCG- -5'
18618 3' -53.4 NC_004682.1 + 24349 0.67 0.72444
Target:  5'- aGGGGAuCAAGAugaccaaGC-ACGG-CACCCGUg -3'
miRNA:   3'- -CUCCUuGUUCU-------UGaUGCCgGUGGGCG- -5'
18618 3' -53.4 NC_004682.1 + 8942 0.67 0.721185
Target:  5'- gGAGGu-CAAGGGCacccgguuccugcGCGGCCAgCUCGCg -3'
miRNA:   3'- -CUCCuuGUUCUUGa------------UGCCGGU-GGGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.