Results 1 - 9 of 9 are showing below:
Show page:
<< Previous Page | Next Page >>
| ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value
|
| Predicted miRNA align pattern | |||||||
| 18618 | 5' | -57 | NC_004682.1 | + | 9495 | 0.66 | 0.635015 |
|
Target: 5'- cUGaUGGGCGUCccccaGCGGCuGCUGUUCggCGu -3' miRNA: 3'- aGC-GCCUGUAG-----CGCCG-CGACAAGa-GC- -5' |
|||||||
| 18618 | 5' | -57 | NC_004682.1 | + | 6522 | 0.66 | 0.613284 |
|
Target: 5'- gCGCGGugGUCGuCGGCcagGUgCUCa -3' miRNA: 3'- aGCGCCugUAGC-GCCGcgaCAaGAGc -5' |
|||||||
| 18618 | 5' | -57 | NC_004682.1 | + | 13627 | 0.66 | 0.598105 |
|
Target: 5'- aCGCGGGCAgcacggcccucggCGCGGCGaagaaguucaUGacCUCGg -3' miRNA: 3'- aGCGCCUGUa------------GCGCCGCg---------ACaaGAGC- -5' |
|||||||
| 18618 | 5' | -57 | NC_004682.1 | + | 16241 | 0.68 | 0.466449 |
|
Target: 5'- -gGCGuGGCGUCGUuccuGGCGCUGUg--CGg -3' miRNA: 3'- agCGC-CUGUAGCG----CCGCGACAagaGC- -5' |
|||||||
| 18618 | 5' | -57 | NC_004682.1 | + | 27675 | 0.69 | 0.427747 |
|
Target: 5'- uUCGaUGGugAUCGCGGCgaucccgccGCUGUggCUCc -3' miRNA: 3'- -AGC-GCCugUAGCGCCG---------CGACAa-GAGc -5' |
|||||||
| 18618 | 5' | -57 | NC_004682.1 | + | 37527 | 0.69 | 0.427747 |
|
Target: 5'- gUCGUGGACGcaGUGGUGCUcGcUCUCGc -3' miRNA: 3'- -AGCGCCUGUagCGCCGCGA-CaAGAGC- -5' |
|||||||
| 18618 | 5' | -57 | NC_004682.1 | + | 2963 | 0.72 | 0.286639 |
|
Target: 5'- gCGCGGGCG--GCGGCGCUGggCa-- -3' miRNA: 3'- aGCGCCUGUagCGCCGCGACaaGagc -5' |
|||||||
| 18618 | 5' | -57 | NC_004682.1 | + | 27466 | 0.72 | 0.272678 |
|
Target: 5'- cUCGCGGACcUCGCgacggacaacGGCGUgucgaGUUCUCa -3' miRNA: 3'- -AGCGCCUGuAGCG----------CCGCGa----CAAGAGc -5' |
|||||||
| 18618 | 5' | -57 | NC_004682.1 | + | 12956 | 1 | 0.003073 |
|
Target: 5'- uUCGCGGACAUCGCGGCGC-GUUCUCGg -3' miRNA: 3'- -AGCGCCUGUAGCGCCGCGaCAAGAGC- -5' |
|||||||
<< Previous Page | Next Page >>
Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
Back To miRNA display CGI home