miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18621 3' -60.3 NC_004682.1 + 47953 0.66 0.455704
Target:  5'- cGAUGAuGUCGaGGaacagGCAGUUCGCCGg -3'
miRNA:   3'- cCUGCU-CGGCcCCga---CGUCAAGCGGU- -5'
18621 3' -60.3 NC_004682.1 + 5272 0.66 0.446119
Target:  5'- cGcCGcGCUGGGGCUGCuGcucaCGCCGg -3'
miRNA:   3'- cCuGCuCGGCCCCGACGuCaa--GCGGU- -5'
18621 3' -60.3 NC_004682.1 + 3178 0.66 0.446118
Target:  5'- cGGCGGGCCaGGGC-GCGGgcaaccgCGuCCAc -3'
miRNA:   3'- cCUGCUCGGcCCCGaCGUCaa-----GC-GGU- -5'
18621 3' -60.3 NC_004682.1 + 47687 0.66 0.436647
Target:  5'- uGGugccCGAGuuGGcGGCUGCug--CGCCGc -3'
miRNA:   3'- -CCu---GCUCggCC-CCGACGucaaGCGGU- -5'
18621 3' -60.3 NC_004682.1 + 5948 0.66 0.418056
Target:  5'- aGGGCGAGCgcuGGCUGgccaAGUUCgGCCAg -3'
miRNA:   3'- -CCUGCUCGgccCCGACg---UCAAG-CGGU- -5'
18621 3' -60.3 NC_004682.1 + 17377 0.66 0.412574
Target:  5'- cGGCGgcAGCCGGGGUgguggcacccagagGCAGUcgaacgCGCCc -3'
miRNA:   3'- cCUGC--UCGGCCCCGa-------------CGUCAa-----GCGGu -5'
18621 3' -60.3 NC_004682.1 + 37393 0.67 0.348758
Target:  5'- uGGGCGGGuCUGGGuGUUGCcGUccUCGUCGg -3'
miRNA:   3'- -CCUGCUC-GGCCC-CGACGuCA--AGCGGU- -5'
18621 3' -60.3 NC_004682.1 + 4503 0.68 0.317312
Target:  5'- cGGCGGGCuCGGGGCcGCAcg-CGCUu -3'
miRNA:   3'- cCUGCUCG-GCCCCGaCGUcaaGCGGu -5'
18621 3' -60.3 NC_004682.1 + 43070 0.69 0.295161
Target:  5'- cGGuguCGuuGCCGGGGaugugcgcgUUGCAGaUCGCCAg -3'
miRNA:   3'- -CCu--GCu-CGGCCCC---------GACGUCaAGCGGU- -5'
18621 3' -60.3 NC_004682.1 + 15950 0.7 0.235965
Target:  5'- cGGCGAGCCGGGGUUcUGGacucgUCGCUg -3'
miRNA:   3'- cCUGCUCGGCCCCGAcGUCa----AGCGGu -5'
18621 3' -60.3 NC_004682.1 + 12486 1.1 0.000255
Target:  5'- gGGACGAGCCGGGGCUGCAGUUCGCCAa -3'
miRNA:   3'- -CCUGCUCGGCCCCGACGUCAAGCGGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.