miRNA display CGI


Results 1 - 18 of 18 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18621 5' -55.9 NC_004682.1 + 16423 0.66 0.650435
Target:  5'- cGCCAAGAuGCCggGUgU--CUCCGAGGg -3'
miRNA:   3'- -CGGUUCU-CGGa-CGgGuuGAGGUUCCa -5'
18621 5' -55.9 NC_004682.1 + 32213 0.66 0.639276
Target:  5'- aCCGAGAGCagGUCCAuCUCCuugcGGGUc -3'
miRNA:   3'- cGGUUCUCGgaCGGGUuGAGGu---UCCA- -5'
18621 5' -55.9 NC_004682.1 + 8962 0.66 0.639276
Target:  5'- cGCCAGGAGCUUGagggcuUCGGCUCggCGGGGc -3'
miRNA:   3'- -CGGUUCUCGGACg-----GGUUGAG--GUUCCa -5'
18621 5' -55.9 NC_004682.1 + 37214 0.66 0.616947
Target:  5'- cGCCGAGGGCCgugcUGCCCGcgUUCu-GGUu -3'
miRNA:   3'- -CGGUUCUCGG----ACGGGUugAGGuuCCA- -5'
18621 5' -55.9 NC_004682.1 + 11390 0.66 0.605799
Target:  5'- gGCCA--AGCgaGCCCAACg-CAGGGa -3'
miRNA:   3'- -CGGUucUCGgaCGGGUUGagGUUCCa -5'
18621 5' -55.9 NC_004682.1 + 45687 0.66 0.594674
Target:  5'- gGCCAGcacguGGGCCUGUUCGGCUCCc---- -3'
miRNA:   3'- -CGGUU-----CUCGGACGGGUUGAGGuucca -5'
18621 5' -55.9 NC_004682.1 + 49158 0.67 0.57253
Target:  5'- aGCCucuGAGCCUcaucaGCCCAcCUUCGAGa- -3'
miRNA:   3'- -CGGuu-CUCGGA-----CGGGUuGAGGUUCca -5'
18621 5' -55.9 NC_004682.1 + 27180 0.67 0.57253
Target:  5'- cGCCccgcagGAGGGCCgcagGCCCGucggUCAGGGUg -3'
miRNA:   3'- -CGG------UUCUCGGa---CGGGUuga-GGUUCCA- -5'
18621 5' -55.9 NC_004682.1 + 8857 0.67 0.528908
Target:  5'- uCCGAGcGCCgGCCCGACgCCGuAGGc -3'
miRNA:   3'- cGGUUCuCGGaCGGGUUGaGGU-UCCa -5'
18621 5' -55.9 NC_004682.1 + 833 0.68 0.518186
Target:  5'- gGCCAGGAGCCcGCUgAccAC-CCAggAGGUg -3'
miRNA:   3'- -CGGUUCUCGGaCGGgU--UGaGGU--UCCA- -5'
18621 5' -55.9 NC_004682.1 + 1158 0.69 0.466009
Target:  5'- uGCUGAGcAGCCUcCUCGuCUCCGAGGg -3'
miRNA:   3'- -CGGUUC-UCGGAcGGGUuGAGGUUCCa -5'
18621 5' -55.9 NC_004682.1 + 40988 0.69 0.466009
Target:  5'- aGCCAGcGGCCUGgCCAGCUC---GGUg -3'
miRNA:   3'- -CGGUUcUCGGACgGGUUGAGguuCCA- -5'
18621 5' -55.9 NC_004682.1 + 10195 0.71 0.361915
Target:  5'- aGCCGAuGucuGCCaUGCCUuuccGCUCCAGGGg -3'
miRNA:   3'- -CGGUU-Cu--CGG-ACGGGu---UGAGGUUCCa -5'
18621 5' -55.9 NC_004682.1 + 48969 0.71 0.336468
Target:  5'- cGCCcgcAGGGCCUugcgGCCCGAUggggCCGGGGa -3'
miRNA:   3'- -CGGu--UCUCGGA----CGGGUUGa---GGUUCCa -5'
18621 5' -55.9 NC_004682.1 + 27591 0.74 0.217165
Target:  5'- cGCCuGGAGCUugcuggUGCUCAGCUCCcuGGUg -3'
miRNA:   3'- -CGGuUCUCGG------ACGGGUUGAGGuuCCA- -5'
18621 5' -55.9 NC_004682.1 + 12634 0.74 0.209714
Target:  5'- gGCCGGGGGCCUagaGCCCccgguccuucugucGACUCCGuAGGa -3'
miRNA:   3'- -CGGUUCUCGGA---CGGG--------------UUGAGGU-UCCa -5'
18621 5' -55.9 NC_004682.1 + 13509 0.76 0.174733
Target:  5'- uUCGAGAaCCUGCUCGACUUCGAGGg -3'
miRNA:   3'- cGGUUCUcGGACGGGUUGAGGUUCCa -5'
18621 5' -55.9 NC_004682.1 + 12520 1.08 0.000721
Target:  5'- gGCCAAGAGCCUGCCCAACUCCAAGGUc -3'
miRNA:   3'- -CGGUUCUCGGACGGGUUGAGGUUCCA- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.