miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18622 3' -54.6 NC_004682.1 + 50777 0.66 0.718877
Target:  5'- cUGACCugGGcauaugugggugucgGGGGUAUGcCAGGUACc -3'
miRNA:   3'- uGCUGGugUC---------------UCCCGUACcGUUCAUG- -5'
18622 3' -54.6 NC_004682.1 + 44621 0.66 0.703492
Target:  5'- uCGACCACcuGGuGGGUgcGGCGuucGUACu -3'
miRNA:   3'- uGCUGGUG--UCuCCCGuaCCGUu--CAUG- -5'
18622 3' -54.6 NC_004682.1 + 20509 0.66 0.692413
Target:  5'- cAUGGCC-CAGAGGGCuauGCGGGa-- -3'
miRNA:   3'- -UGCUGGuGUCUCCCGuacCGUUCaug -5'
18622 3' -54.6 NC_004682.1 + 26553 0.66 0.681273
Target:  5'- gACGGuCCACGGGuucGGGUGUGGCGGcuUGCc -3'
miRNA:   3'- -UGCU-GGUGUCU---CCCGUACCGUUc-AUG- -5'
18622 3' -54.6 NC_004682.1 + 33978 0.66 0.677921
Target:  5'- -aGACCAgcCAGGaGGCcagccaccaggccgAUGGCGGGUGCa -3'
miRNA:   3'- ugCUGGU--GUCUcCCG--------------UACCGUUCAUG- -5'
18622 3' -54.6 NC_004682.1 + 38666 0.66 0.670084
Target:  5'- uGCGACCagcGCAGGuacGGG-AUGGCGAGg-- -3'
miRNA:   3'- -UGCUGG---UGUCU---CCCgUACCGUUCaug -5'
18622 3' -54.6 NC_004682.1 + 49436 0.66 0.670084
Target:  5'- cGCGACCGCgccAGAGGaccagcgagucGCugucgaGGCGGGUACc -3'
miRNA:   3'- -UGCUGGUG---UCUCC-----------CGua----CCGUUCAUG- -5'
18622 3' -54.6 NC_004682.1 + 10058 0.68 0.580148
Target:  5'- gACGACauCGCAGAccgauGGGCGUGG--GGUGCc -3'
miRNA:   3'- -UGCUG--GUGUCU-----CCCGUACCguUCAUG- -5'
18622 3' -54.6 NC_004682.1 + 40101 0.69 0.535943
Target:  5'- gUGGcCCGCAGAGGGUccuuaagguUGGCGuGGUGCu -3'
miRNA:   3'- uGCU-GGUGUCUCCCGu--------ACCGU-UCAUG- -5'
18622 3' -54.6 NC_004682.1 + 18139 0.69 0.503576
Target:  5'- cGCGGCCaaggcgGCAGAGcuacccGGCAUGGuCAAGaGCg -3'
miRNA:   3'- -UGCUGG------UGUCUC------CCGUACC-GUUCaUG- -5'
18622 3' -54.6 NC_004682.1 + 7693 0.69 0.503576
Target:  5'- gACGACCGCcuGGAccGGaGCGUGGCGGcUGCc -3'
miRNA:   3'- -UGCUGGUG--UCU--CC-CGUACCGUUcAUG- -5'
18622 3' -54.6 NC_004682.1 + 24158 0.71 0.375143
Target:  5'- gUGACCGC-GAGGuGaugGGCAAGUACa -3'
miRNA:   3'- uGCUGGUGuCUCC-CguaCCGUUCAUG- -5'
18622 3' -54.6 NC_004682.1 + 26930 0.72 0.348798
Target:  5'- cGCGgcaGCCGCGuccuGGGGGUGUGGCcGGUGCc -3'
miRNA:   3'- -UGC---UGGUGU----CUCCCGUACCGuUCAUG- -5'
18622 3' -54.6 NC_004682.1 + 45744 0.79 0.132681
Target:  5'- uCGACCACGG-GGGUcgGuGCGGGUGCg -3'
miRNA:   3'- uGCUGGUGUCuCCCGuaC-CGUUCAUG- -5'
18622 3' -54.6 NC_004682.1 + 12248 1.1 0.000755
Target:  5'- cACGACCACAGAGGGCAUGGCAAGUACa -3'
miRNA:   3'- -UGCUGGUGUCUCCCGUACCGUUCAUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.