miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18622 5' -56.9 NC_004682.1 + 39014 0.66 0.617872
Target:  5'- uGGUGAUCGGCUugcgcuCGGC-CUcgccgguccACGACGc -3'
miRNA:   3'- gCCACUGGCCGGu-----GCCGaGA---------UGUUGU- -5'
18622 5' -56.9 NC_004682.1 + 50297 0.66 0.606949
Target:  5'- gGGuUGACCGGUCACuGGUUgaccaggACAACGa -3'
miRNA:   3'- gCC-ACUGGCCGGUG-CCGAga-----UGUUGU- -5'
18622 5' -56.9 NC_004682.1 + 27727 0.66 0.606949
Target:  5'- uGGUGACUGcGCCacGCGGCg--ACcGCAc -3'
miRNA:   3'- gCCACUGGC-CGG--UGCCGagaUGuUGU- -5'
18622 5' -56.9 NC_004682.1 + 44105 0.66 0.585176
Target:  5'- uCGGgagGAUCGGCC-CGGUcacCUugAACGa -3'
miRNA:   3'- -GCCa--CUGGCCGGuGCCGa--GAugUUGU- -5'
18622 5' -56.9 NC_004682.1 + 44740 0.66 0.573263
Target:  5'- cCGGUGGCCacguacuccccguGGUCACGaaguCUCUugAACGg -3'
miRNA:   3'- -GCCACUGG-------------CCGGUGCc---GAGAugUUGU- -5'
18622 5' -56.9 NC_004682.1 + 25294 0.66 0.571103
Target:  5'- gCGcGUGAgCGGCCcagACGGUgagcaguacaacgaUCUGCAGCc -3'
miRNA:   3'- -GC-CACUgGCCGG---UGCCG--------------AGAUGUUGu -5'
18622 5' -56.9 NC_004682.1 + 16688 0.67 0.552827
Target:  5'- gCGGUGAUgGGCCugGaggGCUCggguCGAUg -3'
miRNA:   3'- -GCCACUGgCCGGugC---CGAGau--GUUGu -5'
18622 5' -56.9 NC_004682.1 + 7741 0.67 0.521034
Target:  5'- cCGGUGcCCGucGCC-UGGCgaUCUGCAACGc -3'
miRNA:   3'- -GCCACuGGC--CGGuGCCG--AGAUGUUGU- -5'
18622 5' -56.9 NC_004682.1 + 42541 0.68 0.510592
Target:  5'- -cGUGGCuCGGCgGCGcCUCUGCGGCc -3'
miRNA:   3'- gcCACUG-GCCGgUGCcGAGAUGUUGu -5'
18622 5' -56.9 NC_004682.1 + 24833 0.68 0.507477
Target:  5'- uGGUG-UCGGCCugGaagaccgcuccgauGCUCUACAAgAa -3'
miRNA:   3'- gCCACuGGCCGGugC--------------CGAGAUGUUgU- -5'
18622 5' -56.9 NC_004682.1 + 32313 0.68 0.500239
Target:  5'- aGGUGuCCgcgagcgaGGCCAucUGGCUCUGCAu-- -3'
miRNA:   3'- gCCACuGG--------CCGGU--GCCGAGAUGUugu -5'
18622 5' -56.9 NC_004682.1 + 17682 0.68 0.479819
Target:  5'- --aUGAUCGGCacgacgcugacCACGGCgCUGCAGCAg -3'
miRNA:   3'- gccACUGGCCG-----------GUGCCGaGAUGUUGU- -5'
18622 5' -56.9 NC_004682.1 + 41265 0.68 0.469763
Target:  5'- aCGGguccGACCGGCCaccACGGUUCUuCAcCGu -3'
miRNA:   3'- -GCCa---CUGGCCGG---UGCCGAGAuGUuGU- -5'
18622 5' -56.9 NC_004682.1 + 20335 0.68 0.469763
Target:  5'- aCGGUGAacuUCGGCa--GGgUCUACGGCGg -3'
miRNA:   3'- -GCCACU---GGCCGgugCCgAGAUGUUGU- -5'
18622 5' -56.9 NC_004682.1 + 6524 0.69 0.44998
Target:  5'- gCGGUGGucgUCGGCCAgGuGCUCaagcACGACAu -3'
miRNA:   3'- -GCCACU---GGCCGGUgC-CGAGa---UGUUGU- -5'
18622 5' -56.9 NC_004682.1 + 22003 0.69 0.440262
Target:  5'- uCGGUGAacCCGGCUACGGCcacuUCUGg---- -3'
miRNA:   3'- -GCCACU--GGCCGGUGCCG----AGAUguugu -5'
18622 5' -56.9 NC_004682.1 + 7093 0.69 0.430665
Target:  5'- uGGUGGuuCCGGUCG-GGCcgCUACGACGg -3'
miRNA:   3'- gCCACU--GGCCGGUgCCGa-GAUGUUGU- -5'
18622 5' -56.9 NC_004682.1 + 8158 0.69 0.411845
Target:  5'- gGGUGACCGGaUCACG-CUCggguuCGACGg -3'
miRNA:   3'- gCCACUGGCC-GGUGCcGAGau---GUUGU- -5'
18622 5' -56.9 NC_004682.1 + 38564 0.7 0.375776
Target:  5'- -cGUGGCCGGUCAcCGGC-CUGCGuCAu -3'
miRNA:   3'- gcCACUGGCCGGU-GCCGaGAUGUuGU- -5'
18622 5' -56.9 NC_004682.1 + 9848 0.71 0.341902
Target:  5'- aCGGcaccgagcUGGCCaGGCCGCuGGCUC-GCAACGu -3'
miRNA:   3'- -GCC--------ACUGG-CCGGUG-CCGAGaUGUUGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.