miRNA display CGI

Results 1 - 8 of 8 are showing below:
Show page: 1

<< Previous Page | Next Page >>

ID	Location	Perfect MFE.*	RefSeq Acc.	strand	Start Position	R_P_ratio#	P value
	Predicted miRNA align pattern
18623	5'	-57.2	NC_004682.1	+	7396	0.66	0.593527
	Target:  5'- aCUUCGaCGCAGACGgcaaUCCGguGggCa- -3' miRNA:   3'- -GGAGC-GCGUCUGCg---AGGCguCaaGca -5'
18623	5'	-57.2	NC_004682.1	+	22316	0.66	0.571992
	Target:  5'- aCUUCGCGUGGGCuCUCCGCAa----- -3' miRNA:   3'- -GGAGCGCGUCUGcGAGGCGUcaagca -5'
18623	5'	-57.2	NC_004682.1	+	12474	0.68	0.488329
	Target:  5'- uCCUCGCGgacggGGACGagccggggCUGCAGUUCGc -3' miRNA:   3'- -GGAGCGCg----UCUGCga------GGCGUCAAGCa -5'
18623	5'	-57.2	NC_004682.1	+	42319	0.69	0.429523
	Target:  5'- uCCUCgGUGCGGuagagccaGCUCCGCAcUUCGg -3' miRNA:   3'- -GGAG-CGCGUCug------CGAGGCGUcAAGCa -5'
18623	5'	-57.2	NC_004682.1	+	11629	0.69	0.429523
	Target:  5'- ---aGCGCgAGGCGUUCCaGCGGUUCa- -3' miRNA:   3'- ggagCGCG-UCUGCGAGG-CGUCAAGca -5'
18623	5'	-57.2	NC_004682.1	+	42560	0.69	0.409943
	Target:  5'- uCCUCGCGgGGGaccucccCGCUCuCGUAGUccUCGg -3' miRNA:   3'- -GGAGCGCgUCU-------GCGAG-GCGUCA--AGCa -5'
18623	5'	-57.2	NC_004682.1	+	26273	0.7	0.392714
	Target:  5'- gUUCGCGgGGACGUuguugCCGCcGUUCGa -3' miRNA:   3'- gGAGCGCgUCUGCGa----GGCGuCAAGCa -5'
18623	5'	-57.2	NC_004682.1	+	10847	1.08	0.000731
	Target:  5'- gCCUCGCGCAGACGCUCCGCAGUUCGUu -3' miRNA:   3'- -GGAGCGCGUCUGCGAGGCGUCAAGCA- -5'

<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home