miRNA display CGI


Results 1 - 13 of 13 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18625 3' -57.7 NC_004682.1 + 5705 0.66 0.548142
Target:  5'- uGUCgggGGUCUcUGAGaGAGUUGCUGGc -3'
miRNA:   3'- gCGGaa-CCGGAuGCUC-CUCGACGACU- -5'
18625 3' -57.7 NC_004682.1 + 49958 0.66 0.537442
Target:  5'- uGCCUgUGGCCguccCGAuGAGCaUGCUGc -3'
miRNA:   3'- gCGGA-ACCGGau--GCUcCUCG-ACGACu -5'
18625 3' -57.7 NC_004682.1 + 19201 0.66 0.515219
Target:  5'- cCGCCUgugaaagUGGUaUACGAGGAGCcGggGAa -3'
miRNA:   3'- -GCGGA-------ACCGgAUGCUCCUCGaCgaCU- -5'
18625 3' -57.7 NC_004682.1 + 10148 0.67 0.473988
Target:  5'- aCGCCUgagccccaGCCUAacccggcUGAGGAgGCUGCUGc -3'
miRNA:   3'- -GCGGAac------CGGAU-------GCUCCU-CGACGACu -5'
18625 3' -57.7 NC_004682.1 + 4433 0.67 0.454989
Target:  5'- aGCCUUGGuCCUcuaccgggGCGAcaaGGAGCgcGCUGc -3'
miRNA:   3'- gCGGAACC-GGA--------UGCU---CCUCGa-CGACu -5'
18625 3' -57.7 NC_004682.1 + 33726 0.68 0.423951
Target:  5'- cCGCCUUGGCCggggccuucuuCGgggccucagccGGGGGCUcGUUGAa -3'
miRNA:   3'- -GCGGAACCGGau---------GC-----------UCCUCGA-CGACU- -5'
18625 3' -57.7 NC_004682.1 + 20907 0.68 0.398771
Target:  5'- aGCUguggaucaucuucgGGCCUGCGAaguGGugccuGCUGCUGAc -3'
miRNA:   3'- gCGGaa------------CCGGAUGCU---CCu----CGACGACU- -5'
18625 3' -57.7 NC_004682.1 + 12751 0.68 0.388791
Target:  5'- uCGcCCUUGGCaUAUG-GGAGCgcGCUGAc -3'
miRNA:   3'- -GC-GGAACCGgAUGCuCCUCGa-CGACU- -5'
18625 3' -57.7 NC_004682.1 + 19718 0.71 0.256303
Target:  5'- uGCC-UGGCUccacCGAGGAGCccGCUGAg -3'
miRNA:   3'- gCGGaACCGGau--GCUCCUCGa-CGACU- -5'
18625 3' -57.7 NC_004682.1 + 4692 0.73 0.20794
Target:  5'- aGCCUUGGCCUc---GGuGCUGCUGu -3'
miRNA:   3'- gCGGAACCGGAugcuCCuCGACGACu -5'
18625 3' -57.7 NC_004682.1 + 19604 0.73 0.20794
Target:  5'- gGCCcUGGCCgaagGAGGAGCUGCc-- -3'
miRNA:   3'- gCGGaACCGGaug-CUCCUCGACGacu -5'
18625 3' -57.7 NC_004682.1 + 23243 0.77 0.106901
Target:  5'- cCGCaaggacaucggUGGCCUgcGCGAGGAGCUGCgGAc -3'
miRNA:   3'- -GCGga---------ACCGGA--UGCUCCUCGACGaCU- -5'
18625 3' -57.7 NC_004682.1 + 10448 1.09 0.000492
Target:  5'- gCGCCUUGGCCUACGAGGAGCUGCUGAu -3'
miRNA:   3'- -GCGGAACCGGAUGCUCCUCGACGACU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.