miRNA display CGI


Results 1 - 20 of 35 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18625 5' -59.7 NC_004682.1 + 44440 0.66 0.490603
Target:  5'- cGCCCgAGCGGGGUagUUGCcGaugGGCUGCc -3'
miRNA:   3'- -CGGG-UCGCUCCGa-AGCGcCa--CUGGCG- -5'
18625 5' -59.7 NC_004682.1 + 5373 0.66 0.489605
Target:  5'- cGCCCGGUucGGGaagugguGCUUCGaccgcggccUGGUGACCGa -3'
miRNA:   3'- -CGGGUCG--CUC-------CGAAGC---------GCCACUGGCg -5'
18625 5' -59.7 NC_004682.1 + 16719 0.66 0.480666
Target:  5'- -aCCAGaCGAucugGGCUgacaaCGCGGUGuccuucACCGCc -3'
miRNA:   3'- cgGGUC-GCU----CCGAa----GCGCCAC------UGGCG- -5'
18625 5' -59.7 NC_004682.1 + 11915 0.66 0.480666
Target:  5'- uGUCCGGUcaaGGGCagCGCGGUGGCg-- -3'
miRNA:   3'- -CGGGUCGc--UCCGaaGCGCCACUGgcg -5'
18625 5' -59.7 NC_004682.1 + 27995 0.66 0.47869
Target:  5'- cGCaCCAGCGcGGGC-UC-CGGgaccuucuuccgGGCCGCu -3'
miRNA:   3'- -CG-GGUCGC-UCCGaAGcGCCa-----------CUGGCG- -5'
18625 5' -59.7 NC_004682.1 + 47718 0.66 0.469849
Target:  5'- uGCgCCAGUGAucgacccguaaccGGCgauggUCGCGGUGgugggguaGCCGg -3'
miRNA:   3'- -CG-GGUCGCU-------------CCGa----AGCGCCAC--------UGGCg -5'
18625 5' -59.7 NC_004682.1 + 47374 0.66 0.461093
Target:  5'- gGCCCAGC-AGGCUgcauguuggCGUaccaGGUGuCCGg -3'
miRNA:   3'- -CGGGUCGcUCCGAa--------GCG----CCACuGGCg -5'
18625 5' -59.7 NC_004682.1 + 6501 0.66 0.461093
Target:  5'- aCCUGGCG-GGCUacucgcaaggCGCGGUGGUCGUc -3'
miRNA:   3'- cGGGUCGCuCCGAa---------GCGCCACUGGCG- -5'
18625 5' -59.7 NC_004682.1 + 61 0.66 0.455303
Target:  5'- cGCCCAGgaaggccccguggaGAGGCUcagagccgcccUCGCGGgcGACUGg -3'
miRNA:   3'- -CGGGUCg-------------CUCCGA-----------AGCGCCa-CUGGCg -5'
18625 5' -59.7 NC_004682.1 + 32618 0.66 0.450509
Target:  5'- -gCCAGCGGGccuugaugacguaGCgccaugCGCGGUGGuuGCc -3'
miRNA:   3'- cgGGUCGCUC-------------CGaa----GCGCCACUggCG- -5'
18625 5' -59.7 NC_004682.1 + 3174 0.67 0.441949
Target:  5'- aCCaCGGCG-GGCcagggCGCGGgcaACCGCg -3'
miRNA:   3'- cGG-GUCGCuCCGaa---GCGCCac-UGGCG- -5'
18625 5' -59.7 NC_004682.1 + 49016 0.67 0.432547
Target:  5'- cGCCCGGaCG-GGCgaaCGCGgGUGAggaCGCc -3'
miRNA:   3'- -CGGGUC-GCuCCGaa-GCGC-CACUg--GCG- -5'
18625 5' -59.7 NC_004682.1 + 23668 0.67 0.423263
Target:  5'- gGCCCuccuGCGGGGCgaguUCGaUGaGUGGCUGg -3'
miRNA:   3'- -CGGGu---CGCUCCGa---AGC-GC-CACUGGCg -5'
18625 5' -59.7 NC_004682.1 + 40235 0.67 0.405059
Target:  5'- cGCCCAcccgcgaaugauGCGGGGa---GCGGggucgucuuUGACCGCc -3'
miRNA:   3'- -CGGGU------------CGCUCCgaagCGCC---------ACUGGCG- -5'
18625 5' -59.7 NC_004682.1 + 26765 0.67 0.396144
Target:  5'- aGCCCAGCgggggcacuccaGAGGCccaGCGGUccaucccCCGCa -3'
miRNA:   3'- -CGGGUCG------------CUCCGaagCGCCAcu-----GGCG- -5'
18625 5' -59.7 NC_004682.1 + 12752 0.67 0.396144
Target:  5'- cCCCaacGGCGAucucGUUgaggUCGCGGUGACCGg -3'
miRNA:   3'- cGGG---UCGCUc---CGA----AGCGCCACUGGCg -5'
18625 5' -59.7 NC_004682.1 + 17753 0.68 0.387357
Target:  5'- cGCUCAGCucGGCaacaCGCuGGUGACCa- -3'
miRNA:   3'- -CGGGUCGcuCCGaa--GCG-CCACUGGcg -5'
18625 5' -59.7 NC_004682.1 + 4349 0.68 0.387357
Target:  5'- cGCCUGGauCGcAGGCUUCGCccaGACCGUg -3'
miRNA:   3'- -CGGGUC--GC-UCCGAAGCGccaCUGGCG- -5'
18625 5' -59.7 NC_004682.1 + 33335 0.68 0.387357
Target:  5'- gGCCCgagAGCGAGGUcagCGCuGGcaucagcgcGACCGCc -3'
miRNA:   3'- -CGGG---UCGCUCCGaa-GCG-CCa--------CUGGCG- -5'
18625 5' -59.7 NC_004682.1 + 41389 0.68 0.387357
Target:  5'- aGCaUCAGCGuccGGGCagcugCGuCGGUGACCGa -3'
miRNA:   3'- -CG-GGUCGC---UCCGaa---GC-GCCACUGGCg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.