miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18626 3' -61.9 NC_004682.1 + 17426 0.66 0.373111
Target:  5'- uCUGCA-GGCgauGGGCCAacUCGguggaCCGCUGa -3'
miRNA:   3'- -GACGUaCCGag-CCCGGU--AGC-----GGCGGC- -5'
18626 3' -61.9 NC_004682.1 + 20575 0.66 0.36471
Target:  5'- -cGaCAUGGUccuUCGGGgCGUgGUCGCUGg -3'
miRNA:   3'- gaC-GUACCG---AGCCCgGUAgCGGCGGC- -5'
18626 3' -61.9 NC_004682.1 + 36322 0.66 0.35644
Target:  5'- ----cUGGCgagugccaGGGCCGUCGUCGCgGg -3'
miRNA:   3'- gacguACCGag------CCCGGUAGCGGCGgC- -5'
18626 3' -61.9 NC_004682.1 + 20616 0.66 0.35644
Target:  5'- gCUGCAUgaGGC-CGGGuUCAcgaaguaccuUCGCCuGCCGa -3'
miRNA:   3'- -GACGUA--CCGaGCCC-GGU----------AGCGG-CGGC- -5'
18626 3' -61.9 NC_004682.1 + 28908 0.66 0.337925
Target:  5'- gUGCA-GGCUUGGGCCGgugaaucaugcggaaGCUGCUu -3'
miRNA:   3'- gACGUaCCGAGCCCGGUag-------------CGGCGGc -5'
18626 3' -61.9 NC_004682.1 + 15594 0.66 0.332431
Target:  5'- -gGCAcGGcCUCgGGGCCGcUGCCGuuGg -3'
miRNA:   3'- gaCGUaCC-GAG-CCCGGUaGCGGCggC- -5'
18626 3' -61.9 NC_004682.1 + 49375 0.67 0.288041
Target:  5'- cCUGCcgGGaaguugaCGGGC--UCGCCGCUGg -3'
miRNA:   3'- -GACGuaCCga-----GCCCGguAGCGGCGGC- -5'
18626 3' -61.9 NC_004682.1 + 35248 0.68 0.281112
Target:  5'- -gGCAgcGGCccCGaGGCCGU-GCCGCCGa -3'
miRNA:   3'- gaCGUa-CCGa-GC-CCGGUAgCGGCGGC- -5'
18626 3' -61.9 NC_004682.1 + 7439 0.68 0.242303
Target:  5'- -cGCGUGGaUCa--CCAUCGCCGCCGu -3'
miRNA:   3'- gaCGUACCgAGcccGGUAGCGGCGGC- -5'
18626 3' -61.9 NC_004682.1 + 27403 0.69 0.236286
Target:  5'- -cGgGUGGCcaCGGGCggcacaAUCGCCGUCGg -3'
miRNA:   3'- gaCgUACCGa-GCCCGg-----UAGCGGCGGC- -5'
18626 3' -61.9 NC_004682.1 + 47568 0.69 0.234505
Target:  5'- -cGUAUGGCUggcaccgccgccacCGGGUgGguugccugCGCCGCCGa -3'
miRNA:   3'- gaCGUACCGA--------------GCCCGgUa-------GCGGCGGC- -5'
18626 3' -61.9 NC_004682.1 + 10245 1.09 0.000195
Target:  5'- aCUGCAUGGCUCGGGCCAUCGCCGCCGg -3'
miRNA:   3'- -GACGUACCGAGCCCGGUAGCGGCGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.