Results 1 - 8 of 8 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# |
P value![]() |
Predicted miRNA align pattern | |||||||
18626 | 5' | -54.3 | NC_004682.1 | + | 7117 | 0.66 | 0.716202 |
Target: 5'- -cUGUCGACgGCGGCUgguacCuGCCCg- -3' miRNA: 3'- caGCAGUUGgUGCCGAaa---GuCGGGau -5' |
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18626 | 5' | -54.3 | NC_004682.1 | + | 22885 | 0.66 | 0.716202 |
Target: 5'- cGUCGUCGGCCuggUGGCcUUCA-UCCUGg -3' miRNA: 3'- -CAGCAGUUGGu--GCCGaAAGUcGGGAU- -5' |
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18626 | 5' | -54.3 | NC_004682.1 | + | 45741 | 0.66 | 0.694059 |
Target: 5'- -gCGUCGACCACGGgggUCGGUgCg- -3' miRNA: 3'- caGCAGUUGGUGCCgaaAGUCGgGau -5' |
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18626 | 5' | -54.3 | NC_004682.1 | + | 26496 | 0.67 | 0.671664 |
Target: 5'- -cCGUCGACCACGcaGCc--CAGCUCUGc -3' miRNA: 3'- caGCAGUUGGUGC--CGaaaGUCGGGAU- -5' |
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18626 | 5' | -54.3 | NC_004682.1 | + | 30435 | 0.69 | 0.537006 |
Target: 5'- -cCGUCGACCACcuGCUUggCAGCCUc- -3' miRNA: 3'- caGCAGUUGGUGc-CGAAa-GUCGGGau -5' |
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18626 | 5' | -54.3 | NC_004682.1 | + | 25266 | 0.69 | 0.526082 |
Target: 5'- -gCGUCAAggcCCACGGCg--UGGCCCa- -3' miRNA: 3'- caGCAGUU---GGUGCCGaaaGUCGGGau -5' |
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18626 | 5' | -54.3 | NC_004682.1 | + | 44747 | 0.71 | 0.39387 |
Target: 5'- aUCGUCuucuGCCaACGGCUcacCAGCCCg- -3' miRNA: 3'- cAGCAGu---UGG-UGCCGAaa-GUCGGGau -5' |
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18626 | 5' | -54.3 | NC_004682.1 | + | 10279 | 1.06 | 0.001497 |
Target: 5'- gGUCGUCAACCACGGCUUUCAGCCCUAc -3' miRNA: 3'- -CAGCAGUUGGUGCCGAAAGUCGGGAU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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