miRNA display CGI


Results 1 - 20 of 44 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18627 3' -63.1 NC_004682.1 + 3303 0.66 0.345659
Target:  5'- -uUCGGCAGCgGCGGCgcuGGU-GCCa -3'
miRNA:   3'- guGGCCGUCGgCGCUGac-CCAgCGGg -5'
18627 3' -63.1 NC_004682.1 + 37255 0.66 0.345659
Target:  5'- cCGCCacGGUGGCCGUGGgUGGucaaccaGCCCg -3'
miRNA:   3'- -GUGG--CCGUCGGCGCUgACCcag----CGGG- -5'
18627 3' -63.1 NC_004682.1 + 41091 0.66 0.337827
Target:  5'- -gUCGGCuucGUCGCGAUcaGGUCGCCg -3'
miRNA:   3'- guGGCCGu--CGGCGCUGacCCAGCGGg -5'
18627 3' -63.1 NC_004682.1 + 25678 0.66 0.330125
Target:  5'- aACCGGCAGCagGCGuCgGGGU-GUUCa -3'
miRNA:   3'- gUGGCCGUCGg-CGCuGaCCCAgCGGG- -5'
18627 3' -63.1 NC_004682.1 + 50718 0.66 0.330125
Target:  5'- uGCCGGCGGUCGagcccauuacccCGuucuCUGuccaGUCGCCCg -3'
miRNA:   3'- gUGGCCGUCGGC------------GCu---GACc---CAGCGGG- -5'
18627 3' -63.1 NC_004682.1 + 30736 0.66 0.322553
Target:  5'- gCACCaGcCAGUCGCcGCUGGGcagCGUCUg -3'
miRNA:   3'- -GUGGcC-GUCGGCGcUGACCCa--GCGGG- -5'
18627 3' -63.1 NC_004682.1 + 2963 0.66 0.322553
Target:  5'- gCGCgGGCGGCgGCG-CUGGGcaguggaacuccUCaCCCu -3'
miRNA:   3'- -GUGgCCGUCGgCGCuGACCC------------AGcGGG- -5'
18627 3' -63.1 NC_004682.1 + 42859 0.66 0.322553
Target:  5'- gACCGGCAGCCaGU-ACga-GUCGCCUc -3'
miRNA:   3'- gUGGCCGUCGG-CGcUGaccCAGCGGG- -5'
18627 3' -63.1 NC_004682.1 + 4827 0.66 0.321803
Target:  5'- aCGCgGGCuacGgCGUGgucaugaACUGGGUCGCgCCu -3'
miRNA:   3'- -GUGgCCGu--CgGCGC-------UGACCCAGCG-GG- -5'
18627 3' -63.1 NC_004682.1 + 5466 0.66 0.320307
Target:  5'- gGCCGGCAucGgCGCGGcCUGGuacuggacggucgagCGCCCg -3'
miRNA:   3'- gUGGCCGU--CgGCGCU-GACCca-------------GCGGG- -5'
18627 3' -63.1 NC_004682.1 + 23661 0.66 0.315112
Target:  5'- gACCGGC----GCGAagUGGGUCGCCg -3'
miRNA:   3'- gUGGCCGucggCGCUg-ACCCAGCGGg -5'
18627 3' -63.1 NC_004682.1 + 15872 0.66 0.307077
Target:  5'- -cUgGGUGGCCGUggaggaaGGCUGGGcUgGCCCg -3'
miRNA:   3'- guGgCCGUCGGCG-------CUGACCC-AgCGGG- -5'
18627 3' -63.1 NC_004682.1 + 29395 0.67 0.30062
Target:  5'- --aCGGCGuguaguacucGCCGgGGaacgucGGGUCGCCCg -3'
miRNA:   3'- gugGCCGU----------CGGCgCUga----CCCAGCGGG- -5'
18627 3' -63.1 NC_004682.1 + 24910 0.67 0.294269
Target:  5'- -cCCGGCuggaggcgcaaccgcGCCGUgcgucuGGCUGGGUC-CCCa -3'
miRNA:   3'- guGGCCGu--------------CGGCG------CUGACCCAGcGGG- -5'
18627 3' -63.1 NC_004682.1 + 48223 0.67 0.29357
Target:  5'- aCGCCGGCcucguaucggccAGCCGCGACaccuuGGUCauuggcggGUCCg -3'
miRNA:   3'- -GUGGCCG------------UCGGCGCUGac---CCAG--------CGGG- -5'
18627 3' -63.1 NC_004682.1 + 30905 0.67 0.260251
Target:  5'- -cUCGGUgaucGCCuCGGCgagcGGGUCGCCCu -3'
miRNA:   3'- guGGCCGu---CGGcGCUGa---CCCAGCGGG- -5'
18627 3' -63.1 NC_004682.1 + 40690 0.67 0.260251
Target:  5'- aGCCGGguuaGGCUGgGGCUcaggcguuuccGGGUUGUCCg -3'
miRNA:   3'- gUGGCCg---UCGGCgCUGA-----------CCCAGCGGG- -5'
18627 3' -63.1 NC_004682.1 + 18263 0.68 0.247811
Target:  5'- gACCuGGCugucgguGCCGCGcAgaGGGUCGUCg -3'
miRNA:   3'- gUGG-CCGu------CGGCGC-UgaCCCAGCGGg -5'
18627 3' -63.1 NC_004682.1 + 15988 0.68 0.239992
Target:  5'- gGCCGGCucauucgcauggauGGCCGCGAagcagaUUGcGGcUGCCCg -3'
miRNA:   3'- gUGGCCG--------------UCGGCGCU------GAC-CCaGCGGG- -5'
18627 3' -63.1 NC_004682.1 + 14665 0.68 0.235868
Target:  5'- aCACCGGCcuguggacGCCGacCGGCUGGGacagcaUCGgCCa -3'
miRNA:   3'- -GUGGCCGu-------CGGC--GCUGACCC------AGCgGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.