miRNA display CGI


Results 1 - 20 of 21 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18627 5' -53.4 NC_004682.1 + 20199 0.66 0.775039
Target:  5'- cGGGuCGacCGCaCGACGgAGGGCUUCAc -3'
miRNA:   3'- aCCUuGC--GCGaGUUGCgUCUCGAAGU- -5'
18627 5' -53.4 NC_004682.1 + 22851 0.66 0.76462
Target:  5'- cGGAGCccGCGCUgguGCGCGGuGGCaUCAu -3'
miRNA:   3'- aCCUUG--CGCGAgu-UGCGUC-UCGaAGU- -5'
18627 5' -53.4 NC_004682.1 + 34824 0.66 0.76462
Target:  5'- -cGAGCGUGauCUCAcCGCAGGGgUUCGu -3'
miRNA:   3'- acCUUGCGC--GAGUuGCGUCUCgAAGU- -5'
18627 5' -53.4 NC_004682.1 + 9996 0.66 0.76462
Target:  5'- aGGAACGgGCUCGcauCGaCAuGGGCUacUCGa -3'
miRNA:   3'- aCCUUGCgCGAGUu--GC-GU-CUCGA--AGU- -5'
18627 5' -53.4 NC_004682.1 + 2958 0.66 0.754057
Target:  5'- cUGGGGCGCGggcggCGGCGCuGGGCa--- -3'
miRNA:   3'- -ACCUUGCGCga---GUUGCGuCUCGaagu -5'
18627 5' -53.4 NC_004682.1 + 46451 0.67 0.720528
Target:  5'- cGGcacCGCGCUCcgcgcccGugGCGGcGGCUUCGg -3'
miRNA:   3'- aCCuu-GCGCGAG-------UugCGUC-UCGAAGU- -5'
18627 5' -53.4 NC_004682.1 + 33439 0.67 0.710609
Target:  5'- cUGGGGCGCGUUCGACuGCcucuGGGUgcCAc -3'
miRNA:   3'- -ACCUUGCGCGAGUUG-CGu---CUCGaaGU- -5'
18627 5' -53.4 NC_004682.1 + 49538 0.67 0.699511
Target:  5'- cGGAccaaguaGCGCUCGACGCcGuAGCUcaUCGg -3'
miRNA:   3'- aCCUug-----CGCGAGUUGCGuC-UCGA--AGU- -5'
18627 5' -53.4 NC_004682.1 + 10499 0.67 0.688345
Target:  5'- cGGugacCGCGCUCGACGCGGuGaaccacggUCGg -3'
miRNA:   3'- aCCuu--GCGCGAGUUGCGUCuCga------AGU- -5'
18627 5' -53.4 NC_004682.1 + 15852 0.68 0.643222
Target:  5'- aGGuACGCGCuggucgcaaucgUCAACGCGGuGCgagCAc -3'
miRNA:   3'- aCCuUGCGCG------------AGUUGCGUCuCGaa-GU- -5'
18627 5' -53.4 NC_004682.1 + 10369 0.68 0.639822
Target:  5'- cGGAccuucuACGaCGCUCAACGCgcacuccaccacccGGAGCUg-- -3'
miRNA:   3'- aCCU------UGC-GCGAGUUGCG--------------UCUCGAagu -5'
18627 5' -53.4 NC_004682.1 + 9625 0.68 0.631887
Target:  5'- aGGcccaGCaGUUCAGCGCugcGGAGCUUCGg -3'
miRNA:   3'- aCCuug-CG-CGAGUUGCG---UCUCGAAGU- -5'
18627 5' -53.4 NC_004682.1 + 47431 0.69 0.609226
Target:  5'- cGGAGCGCcCUCGAa-CGGAGCcUCGg -3'
miRNA:   3'- aCCUUGCGcGAGUUgcGUCUCGaAGU- -5'
18627 5' -53.4 NC_004682.1 + 37729 0.69 0.597922
Target:  5'- cGGGcuccucguagAUGCGCUCGACGCAGccuGCg--- -3'
miRNA:   3'- aCCU----------UGCGCGAGUUGCGUCu--CGaagu -5'
18627 5' -53.4 NC_004682.1 + 9591 0.7 0.542051
Target:  5'- cGGAcccgucCGgGCUCGacuACGCGGAGCUUgAg -3'
miRNA:   3'- aCCUu-----GCgCGAGU---UGCGUCUCGAAgU- -5'
18627 5' -53.4 NC_004682.1 + 11035 0.7 0.542051
Target:  5'- cGGGcgGCGCGCUauACGCggucgAGGGCUUCc -3'
miRNA:   3'- aCCU--UGCGCGAguUGCG-----UCUCGAAGu -5'
18627 5' -53.4 NC_004682.1 + 18028 0.71 0.47751
Target:  5'- cGGGACGCgGCUacuuccGCGCcaaGGAGCUUCu -3'
miRNA:   3'- aCCUUGCG-CGAgu----UGCG---UCUCGAAGu -5'
18627 5' -53.4 NC_004682.1 + 26279 0.73 0.352644
Target:  5'- gGGGACGUuguugccgccGUUCGACGUAGAGCUg-- -3'
miRNA:   3'- aCCUUGCG----------CGAGUUGCGUCUCGAagu -5'
18627 5' -53.4 NC_004682.1 + 19694 0.73 0.344044
Target:  5'- aUGGAGCGCaggggcuuccuGCUCGACGUGGAGUa--- -3'
miRNA:   3'- -ACCUUGCG-----------CGAGUUGCGUCUCGaagu -5'
18627 5' -53.4 NC_004682.1 + 18103 0.74 0.3273
Target:  5'- aUGGGugGCcaGCUUcGCGCAGGGCgcgUCGg -3'
miRNA:   3'- -ACCUugCG--CGAGuUGCGUCUCGa--AGU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.