Results 1 - 20 of 30 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18628 | 3' | -55.7 | NC_004682.1 | + | 7696 | 0.66 | 0.676813 |
Target: 5'- gACCgcCugGACcgGaGCGUGG-CGGCu -3' miRNA: 3'- aUGGauGugCUGuaC-CGCGCCaGCUG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 21774 | 0.66 | 0.676813 |
Target: 5'- gGCCUuccaggaguACcCGACGcuccGUGCGGUCGGCa -3' miRNA: 3'- aUGGA---------UGuGCUGUac--CGCGCCAGCUG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 49160 | 0.66 | 0.665776 |
Target: 5'- cACCUugACGugGuUGGCuaccuuGCGGUCa-- -3' miRNA: 3'- aUGGAugUGCugU-ACCG------CGCCAGcug -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 21716 | 0.66 | 0.654707 |
Target: 5'- cGCCUcuGgGCGGCAugaUGGaCGCGGUUG-Cg -3' miRNA: 3'- aUGGA--UgUGCUGU---ACC-GCGCCAGCuG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 13745 | 0.66 | 0.621415 |
Target: 5'- gACCgucAC-CGGCAUGGa--GGUCGGCa -3' miRNA: 3'- aUGGa--UGuGCUGUACCgcgCCAGCUG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 24342 | 0.67 | 0.599251 |
Target: 5'- gGCagaGCugGGCu--GCGUGGUCGACg -3' miRNA: 3'- aUGga-UGugCUGuacCGCGCCAGCUG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 29087 | 0.67 | 0.599251 |
Target: 5'- -uCCUGCcgggaGAUGUcGGCGgGGUCGGCu -3' miRNA: 3'- auGGAUGug---CUGUA-CCGCgCCAGCUG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 42530 | 0.67 | 0.588207 |
Target: 5'- gAUgUACcCGACGUGGCuCGG-CGGCg -3' miRNA: 3'- aUGgAUGuGCUGUACCGcGCCaGCUG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 8962 | 0.67 | 0.588207 |
Target: 5'- -uCCUGCGCGGCcagcucGCGCGGUCu-- -3' miRNA: 3'- auGGAUGUGCUGuac---CGCGCCAGcug -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 50515 | 0.67 | 0.56624 |
Target: 5'- gUGCCUACAgGGCAgggGGUGCcaGGUgGGg -3' miRNA: 3'- -AUGGAUGUgCUGUa--CCGCG--CCAgCUg -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 39295 | 0.68 | 0.54449 |
Target: 5'- aUGCCUGuuu--CGUGGuCGUGGUCGACg -3' miRNA: 3'- -AUGGAUgugcuGUACC-GCGCCAGCUG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 39334 | 0.68 | 0.54449 |
Target: 5'- cGCUUGC-CGu--UGGCGCGG-CGGCa -3' miRNA: 3'- aUGGAUGuGCuguACCGCGCCaGCUG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 5001 | 0.68 | 0.501881 |
Target: 5'- cGCCUACuACGGCGagcaauUGGCcgacGCGGUCG-Cu -3' miRNA: 3'- aUGGAUG-UGCUGU------ACCG----CGCCAGCuG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 49264 | 0.68 | 0.501881 |
Target: 5'- -uCCgGgAUGGCGUcGGCGuCGGUCGACu -3' miRNA: 3'- auGGaUgUGCUGUA-CCGC-GCCAGCUG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 36143 | 0.68 | 0.500834 |
Target: 5'- cGCC-ACGCGACguGUGGCcgaugcugucccaGcCGGUCGGCg -3' miRNA: 3'- aUGGaUGUGCUG--UACCG-------------C-GCCAGCUG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 43416 | 0.69 | 0.491453 |
Target: 5'- gAUCcACGCGGCGUGGCGUGGcUUGcCc -3' miRNA: 3'- aUGGaUGUGCUGUACCGCGCC-AGCuG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 1389 | 0.69 | 0.479073 |
Target: 5'- cGCCUcgACAgCGACucgcugguccucUGGCGCGGUCG-Cg -3' miRNA: 3'- aUGGA--UGU-GCUGu-----------ACCGCGCCAGCuG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 35521 | 0.69 | 0.470906 |
Target: 5'- -uCCUGCugGACcgGGCcGUaGUCGAUg -3' miRNA: 3'- auGGAUGugCUGuaCCG-CGcCAGCUG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 6355 | 0.69 | 0.470906 |
Target: 5'- cGCCgACACGGCGcGG-GCGGugcUCGACa -3' miRNA: 3'- aUGGaUGUGCUGUaCCgCGCC---AGCUG- -5' |
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18628 | 3' | -55.7 | NC_004682.1 | + | 2944 | 0.69 | 0.460797 |
Target: 5'- aACCUGauCGACuucuggGGCGCGGgCGGCg -3' miRNA: 3'- aUGGAUguGCUGua----CCGCGCCaGCUG- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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