miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18630 5' -54.4 NC_004682.1 + 38037 0.66 0.732694
Target:  5'- -uCGCUGGcGGCgUCGGGGGGaucGCUUGGg -3'
miRNA:   3'- cuGCGACU-UCG-AGUCCCCU---UGAGUCg -5'
18630 5' -54.4 NC_004682.1 + 26756 0.66 0.721869
Target:  5'- cGAUcCUGAAGCccagCGGGGGcACUCcagaGGCc -3'
miRNA:   3'- -CUGcGACUUCGa---GUCCCCuUGAG----UCG- -5'
18630 5' -54.4 NC_004682.1 + 33767 0.66 0.699952
Target:  5'- -uCGUUGAAGagcgacucUUCGGGGGc-CUCGGCg -3'
miRNA:   3'- cuGCGACUUC--------GAGUCCCCuuGAGUCG- -5'
18630 5' -54.4 NC_004682.1 + 10208 0.67 0.677761
Target:  5'- cAUGCcuuuccGCUcCAGGGGAGCgUCGGCa -3'
miRNA:   3'- cUGCGacuu--CGA-GUCCCCUUG-AGUCG- -5'
18630 5' -54.4 NC_004682.1 + 29815 0.68 0.61046
Target:  5'- uGAUGUUGAAGCUCAGcGGcauccACUCuGUg -3'
miRNA:   3'- -CUGCGACUUCGAGUCcCCu----UGAGuCG- -5'
18630 5' -54.4 NC_004682.1 + 8958 0.68 0.576931
Target:  5'- aGCGCgccaGGAGCUUgAGGGcuucGGCUCGGCg -3'
miRNA:   3'- cUGCGa---CUUCGAG-UCCCc---UUGAGUCG- -5'
18630 5' -54.4 NC_004682.1 + 29613 0.68 0.565837
Target:  5'- uACGC-GggGCUcCAGGGGAuCUCGu- -3'
miRNA:   3'- cUGCGaCuuCGA-GUCCCCUuGAGUcg -5'
18630 5' -54.4 NC_004682.1 + 41794 0.69 0.522103
Target:  5'- aGCGCUGAAGUaCAGcgucGGGACUCGcGCc -3'
miRNA:   3'- cUGCGACUUCGaGUCc---CCUUGAGU-CG- -5'
18630 5' -54.4 NC_004682.1 + 8355 0.7 0.490179
Target:  5'- cGACGCUGAGGUggccgCAGGGaGGccgaccccgGC-CAGCc -3'
miRNA:   3'- -CUGCGACUUCGa----GUCCC-CU---------UGaGUCG- -5'
18630 5' -54.4 NC_004682.1 + 30382 0.71 0.40999
Target:  5'- cGCGCUGGAGCUU---GGcGCUCAGCc -3'
miRNA:   3'- cUGCGACUUCGAGuccCCuUGAGUCG- -5'
18630 5' -54.4 NC_004682.1 + 8614 1.12 0.000636
Target:  5'- aGACGCUGAAGCUCAGGGGAACUCAGCu -3'
miRNA:   3'- -CUGCGACUUCGAGUCCCCUUGAGUCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.