miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18631 3' -55.6 NC_004682.1 + 41820 0.66 0.665409
Target:  5'- nCGCC-AGCAGCGCguaggucaGGAcgaaGGCUgACUUg -3'
miRNA:   3'- -GCGGuUCGUCGCGg-------CCU----UUGAgUGAG- -5'
18631 3' -55.6 NC_004682.1 + 43535 0.66 0.665409
Target:  5'- aGCCcuugAGGCGGCGCaGGAugccCUCGCg- -3'
miRNA:   3'- gCGG----UUCGUCGCGgCCUuu--GAGUGag -5'
18631 3' -55.6 NC_004682.1 + 42724 0.66 0.665409
Target:  5'- gGCCuc-CAGCGUCGGGAACgggguUCGCg- -3'
miRNA:   3'- gCGGuucGUCGCGGCCUUUG-----AGUGag -5'
18631 3' -55.6 NC_004682.1 + 41979 0.66 0.654292
Target:  5'- aCGCCua-CGGCGUCGGGccggCGCUCg -3'
miRNA:   3'- -GCGGuucGUCGCGGCCUuugaGUGAG- -5'
18631 3' -55.6 NC_004682.1 + 30997 0.66 0.642038
Target:  5'- gGCCAGGCAuucggauGCGCCGG---UUCGCc- -3'
miRNA:   3'- gCGGUUCGU-------CGCGGCCuuuGAGUGag -5'
18631 3' -55.6 NC_004682.1 + 14166 0.66 0.632004
Target:  5'- aCGCCuacuacaaGGGCAGCuaCCGGu-ACUCGCUg -3'
miRNA:   3'- -GCGG--------UUCGUCGc-GGCCuuUGAGUGAg -5'
18631 3' -55.6 NC_004682.1 + 41795 0.66 0.632004
Target:  5'- gCGCUgAAGUacAGCGUCGG-GACUCGCg- -3'
miRNA:   3'- -GCGG-UUCG--UCGCGGCCuUUGAGUGag -5'
18631 3' -55.6 NC_004682.1 + 36035 0.66 0.620855
Target:  5'- gCGUCAGGUAGuCGaCCGGAucUUCGgUCg -3'
miRNA:   3'- -GCGGUUCGUC-GC-GGCCUuuGAGUgAG- -5'
18631 3' -55.6 NC_004682.1 + 2242 0.66 0.620855
Target:  5'- aCGCCAcGCGGUGCCcGGAGAacaACa- -3'
miRNA:   3'- -GCGGUuCGUCGCGG-CCUUUgagUGag -5'
18631 3' -55.6 NC_004682.1 + 43103 0.66 0.620855
Target:  5'- uCGCCAGGCgacgGGCaCCGGGGAuCUUGgUCa -3'
miRNA:   3'- -GCGGUUCG----UCGcGGCCUUU-GAGUgAG- -5'
18631 3' -55.6 NC_004682.1 + 9908 0.67 0.587508
Target:  5'- cCGCCAAGCGGUGgauuCCGuGAGGCgggUGCUg -3'
miRNA:   3'- -GCGGUUCGUCGC----GGC-CUUUGa--GUGAg -5'
18631 3' -55.6 NC_004682.1 + 360 0.67 0.576458
Target:  5'- cCGCCcccAAGCGGCuccccuCCGGGAGCgcccggagCGCUCc -3'
miRNA:   3'- -GCGG---UUCGUCGc-----GGCCUUUGa-------GUGAG- -5'
18631 3' -55.6 NC_004682.1 + 40609 0.67 0.565453
Target:  5'- aGCCAuGCAGUGCCGcguGCcgaCGCUCc -3'
miRNA:   3'- gCGGUuCGUCGCGGCcuuUGa--GUGAG- -5'
18631 3' -55.6 NC_004682.1 + 3466 0.67 0.564356
Target:  5'- aCGCCAAcauGCAGCcugcuggGCCGGGAGCggACg- -3'
miRNA:   3'- -GCGGUU---CGUCG-------CGGCCUUUGagUGag -5'
18631 3' -55.6 NC_004682.1 + 27987 0.68 0.54362
Target:  5'- aGCCuucuGCAGCuccacgaugaGcCCGGAGAUcuUCACUCa -3'
miRNA:   3'- gCGGuu--CGUCG----------C-GGCCUUUG--AGUGAG- -5'
18631 3' -55.6 NC_004682.1 + 36685 0.68 0.522069
Target:  5'- aCGUCAGGCAGCGCCgcccGGAGGaUCGg-- -3'
miRNA:   3'- -GCGGUUCGUCGCGG----CCUUUgAGUgag -5'
18631 3' -55.6 NC_004682.1 + 41335 0.68 0.522069
Target:  5'- aCGCCGaacAGCAGcCGCUGGggGacgcccaUCAgCUCu -3'
miRNA:   3'- -GCGGU---UCGUC-GCGGCCuuUg------AGU-GAG- -5'
18631 3' -55.6 NC_004682.1 + 8948 0.68 0.499806
Target:  5'- aCGCCAucGCAGCGCgccaGGAGcuugaggGCUUcgGCUCg -3'
miRNA:   3'- -GCGGUu-CGUCGCGg---CCUU-------UGAG--UGAG- -5'
18631 3' -55.6 NC_004682.1 + 22412 0.69 0.490394
Target:  5'- cCGUCGAGUccgAGCGaCCGGAuacAACggCGCUCc -3'
miRNA:   3'- -GCGGUUCG---UCGC-GGCCU---UUGa-GUGAG- -5'
18631 3' -55.6 NC_004682.1 + 5262 0.69 0.469782
Target:  5'- cCGCCAuGCucgccGCGCUGGGGcugcuGCUCACg- -3'
miRNA:   3'- -GCGGUuCGu----CGCGGCCUU-----UGAGUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.