miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18631 3' -55.6 NC_004682.1 + 360 0.67 0.576458
Target:  5'- cCGCCcccAAGCGGCuccccuCCGGGAGCgcccggagCGCUCc -3'
miRNA:   3'- -GCGG---UUCGUCGc-----GGCCUUUGa-------GUGAG- -5'
18631 3' -55.6 NC_004682.1 + 2242 0.66 0.620855
Target:  5'- aCGCCAcGCGGUGCCcGGAGAacaACa- -3'
miRNA:   3'- -GCGGUuCGUCGCGG-CCUUUgagUGag -5'
18631 3' -55.6 NC_004682.1 + 2963 0.71 0.374102
Target:  5'- gCGCgGgcGGCGGCGCUGGGcaguggAACUC-CUCa -3'
miRNA:   3'- -GCGgU--UCGUCGCGGCCU------UUGAGuGAG- -5'
18631 3' -55.6 NC_004682.1 + 3466 0.67 0.564356
Target:  5'- aCGCCAAcauGCAGCcugcuggGCCGGGAGCggACg- -3'
miRNA:   3'- -GCGGUU---CGUCG-------CGGCCUUUGagUGag -5'
18631 3' -55.6 NC_004682.1 + 5262 0.69 0.469782
Target:  5'- cCGCCAuGCucgccGCGCUGGGGcugcuGCUCACg- -3'
miRNA:   3'- -GCGGUuCGu----CGCGGCCUU-----UGAGUGag -5'
18631 3' -55.6 NC_004682.1 + 6116 0.69 0.468763
Target:  5'- gGCCAccGGCGGCGUCGGcaugcccgacgagAAGCUCAa-- -3'
miRNA:   3'- gCGGU--UCGUCGCGGCC-------------UUUGAGUgag -5'
18631 3' -55.6 NC_004682.1 + 8267 1.1 0.000614
Target:  5'- uCGCCAAGCAGCGCCGGAAACUCACUCa -3'
miRNA:   3'- -GCGGUUCGUCGCGGCCUUUGAGUGAG- -5'
18631 3' -55.6 NC_004682.1 + 8948 0.68 0.499806
Target:  5'- aCGCCAucGCAGCGCgccaGGAGcuugaggGCUUcgGCUCg -3'
miRNA:   3'- -GCGGUu-CGUCGCGg---CCUU-------UGAG--UGAG- -5'
18631 3' -55.6 NC_004682.1 + 9908 0.67 0.587508
Target:  5'- cCGCCAAGCGGUGgauuCCGuGAGGCgggUGCUg -3'
miRNA:   3'- -GCGGUUCGUCGC----GGC-CUUUGa--GUGAg -5'
18631 3' -55.6 NC_004682.1 + 13608 0.71 0.348085
Target:  5'- aCGCCGAGCacGGCGUucUGGgcGCUCAgUCc -3'
miRNA:   3'- -GCGGUUCG--UCGCG--GCCuuUGAGUgAG- -5'
18631 3' -55.6 NC_004682.1 + 14166 0.66 0.632004
Target:  5'- aCGCCuacuacaaGGGCAGCuaCCGGu-ACUCGCUg -3'
miRNA:   3'- -GCGG--------UUCGUCGc-GGCCuuUGAGUGAg -5'
18631 3' -55.6 NC_004682.1 + 18289 0.71 0.339704
Target:  5'- uGCUgAGGCAGCuCCGGGAGaUCGCUCc -3'
miRNA:   3'- gCGG-UUCGUCGcGGCCUUUgAGUGAG- -5'
18631 3' -55.6 NC_004682.1 + 22412 0.69 0.490394
Target:  5'- cCGUCGAGUccgAGCGaCCGGAuacAACggCGCUCc -3'
miRNA:   3'- -GCGGUUCG---UCGC-GGCCU---UUGa-GUGAG- -5'
18631 3' -55.6 NC_004682.1 + 24578 0.72 0.307658
Target:  5'- uGCCcAGCAGUucacccaCCGGAAGCUCGCg- -3'
miRNA:   3'- gCGGuUCGUCGc------GGCCUUUGAGUGag -5'
18631 3' -55.6 NC_004682.1 + 24645 0.69 0.459642
Target:  5'- uGCCAggaugucgaGGC-GUGCCGGGAACUacgccaacaGCUCg -3'
miRNA:   3'- gCGGU---------UCGuCGCGGCCUUUGAg--------UGAG- -5'
18631 3' -55.6 NC_004682.1 + 27987 0.68 0.54362
Target:  5'- aGCCuucuGCAGCuccacgaugaGcCCGGAGAUcuUCACUCa -3'
miRNA:   3'- gCGGuu--CGUCG----------C-GGCCUUUG--AGUGAG- -5'
18631 3' -55.6 NC_004682.1 + 30997 0.66 0.642038
Target:  5'- gGCCAGGCAuucggauGCGCCGG---UUCGCc- -3'
miRNA:   3'- gCGGUUCGU-------CGCGGCCuuuGAGUGag -5'
18631 3' -55.6 NC_004682.1 + 32911 0.69 0.43972
Target:  5'- aCGaCCGAGaacgacaGGUGCCGGGAcGCUCcaGCUCg -3'
miRNA:   3'- -GC-GGUUCg------UCGCGGCCUU-UGAG--UGAG- -5'
18631 3' -55.6 NC_004682.1 + 33703 0.69 0.449621
Target:  5'- aGCUggGCAggacccGCGCCGGAAGC-CAgUg -3'
miRNA:   3'- gCGGuuCGU------CGCGGCCUUUGaGUgAg -5'
18631 3' -55.6 NC_004682.1 + 34192 0.71 0.383063
Target:  5'- uGCCGcGCAGCGCCugcuGGAACUUGCg- -3'
miRNA:   3'- gCGGUuCGUCGCGGc---CUUUGAGUGag -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.