miRNA display CGI


Results 1 - 20 of 28 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18631 5' -62.7 NC_004682.1 + 7932 0.66 0.36645
Target:  5'- -cGGGGgGCCGgCGGGCCAUGagcagUGGc -3'
miRNA:   3'- guCUCCgCGGCgGCUCGGUGCa----GCCc -5'
18631 5' -62.7 NC_004682.1 + 3056 0.66 0.36645
Target:  5'- -cGAGGCgGCUGUCGAGuUCugGgaaGGGa -3'
miRNA:   3'- guCUCCG-CGGCGGCUC-GGugCag-CCC- -5'
18631 5' -62.7 NC_004682.1 + 48832 0.66 0.358302
Target:  5'- -cGGGuGCGCCGUCG-GCC---UCGGGg -3'
miRNA:   3'- guCUC-CGCGGCGGCuCGGugcAGCCC- -5'
18631 5' -62.7 NC_004682.1 + 41456 0.66 0.358302
Target:  5'- --cAGGCGCuCGUCGAccgcGCCAUGUCGu- -3'
miRNA:   3'- gucUCCGCG-GCGGCU----CGGUGCAGCcc -5'
18631 5' -62.7 NC_004682.1 + 41454 0.66 0.350282
Target:  5'- gUAGAGGU-CCgacaGCCGAGUCcUGUUGGGg -3'
miRNA:   3'- -GUCUCCGcGG----CGGCUCGGuGCAGCCC- -5'
18631 5' -62.7 NC_004682.1 + 36317 0.66 0.350282
Target:  5'- aCGGAcuGGCGagUGCCaGGGCCGuCGUCGcGGg -3'
miRNA:   3'- -GUCU--CCGCg-GCGG-CUCGGU-GCAGC-CC- -5'
18631 5' -62.7 NC_004682.1 + 24916 0.66 0.342391
Target:  5'- uGGAGGCGCaaCCGcGCCguGCGUCuGGc -3'
miRNA:   3'- gUCUCCGCGgcGGCuCGG--UGCAGcCC- -5'
18631 5' -62.7 NC_004682.1 + 29386 0.66 0.334628
Target:  5'- cCAGGaaccacGGCGUguaguacuCGCCGGGgaACGUCGGGu -3'
miRNA:   3'- -GUCU------CCGCG--------GCGGCUCggUGCAGCCC- -5'
18631 5' -62.7 NC_004682.1 + 4553 0.66 0.326996
Target:  5'- cCAGAGGgaugGCCGCaacGCCGCGuucgcUCGGGc -3'
miRNA:   3'- -GUCUCCg---CGGCGgcuCGGUGC-----AGCCC- -5'
18631 5' -62.7 NC_004682.1 + 44697 0.66 0.324731
Target:  5'- gCAGcGGCccGCCGUCGuacgccuuggcguaGGCCGCGUagCGGGc -3'
miRNA:   3'- -GUCuCCG--CGGCGGC--------------UCGGUGCA--GCCC- -5'
18631 5' -62.7 NC_004682.1 + 26228 0.67 0.319492
Target:  5'- -cGuGGCGuUCGCCGGGUCGgaGUCGGa -3'
miRNA:   3'- guCuCCGC-GGCGGCUCGGUg-CAGCCc -5'
18631 5' -62.7 NC_004682.1 + 36547 0.67 0.297762
Target:  5'- gGGAGGCuuggacucGCCGCCcugcggcuuGCCGcCGUCGGa -3'
miRNA:   3'- gUCUCCG--------CGGCGGcu-------CGGU-GCAGCCc -5'
18631 5' -62.7 NC_004682.1 + 23671 0.67 0.293556
Target:  5'- aAGuGG-GUCGCCGAGCagggccacacgguCGUCGGGu -3'
miRNA:   3'- gUCuCCgCGGCGGCUCGgu-----------GCAGCCC- -5'
18631 5' -62.7 NC_004682.1 + 16653 0.67 0.290778
Target:  5'- cCAGcAGGCGCUGCgCG-GCaUGCGcUCGGGc -3'
miRNA:   3'- -GUC-UCCGCGGCG-GCuCG-GUGC-AGCCC- -5'
18631 5' -62.7 NC_004682.1 + 25840 0.67 0.290778
Target:  5'- gCAGA--UGCCGCCGAGUCGgCGUCGu- -3'
miRNA:   3'- -GUCUccGCGGCGGCUCGGU-GCAGCcc -5'
18631 5' -62.7 NC_004682.1 + 11489 0.67 0.283244
Target:  5'- aGGAGGCcggugcuacggcuGCCGCCGcGCCaACGgcaagCGGa -3'
miRNA:   3'- gUCUCCG-------------CGGCGGCuCGG-UGCa----GCCc -5'
18631 5' -62.7 NC_004682.1 + 45937 0.68 0.257779
Target:  5'- -cGuGGUGCCGcCCGAGUaGCG-CGGGc -3'
miRNA:   3'- guCuCCGCGGC-GGCUCGgUGCaGCCC- -5'
18631 5' -62.7 NC_004682.1 + 4719 0.68 0.257779
Target:  5'- ---cGGCGCUGCCGAcgcgGCCACGaagUGGa -3'
miRNA:   3'- gucuCCGCGGCGGCU----CGGUGCa--GCCc -5'
18631 5' -62.7 NC_004682.1 + 35375 0.68 0.245462
Target:  5'- cCAG-GGCaGCCGCCcAGCCcuCG-CGGGa -3'
miRNA:   3'- -GUCuCCG-CGGCGGcUCGGu-GCaGCCC- -5'
18631 5' -62.7 NC_004682.1 + 48168 0.69 0.239488
Target:  5'- gCAGAGGuCGCUGCC--GCCACacCGGGc -3'
miRNA:   3'- -GUCUCC-GCGGCGGcuCGGUGcaGCCC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.