miRNA display CGI


Results 1 - 20 of 26 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18632 3' -58.5 NC_004682.1 + 13833 0.66 0.546611
Target:  5'- gAGCGagGCCggaaGGCCGAGGCCaACc- -3'
miRNA:   3'- -UCGCaaCGGga--CCGGCUCUGGaUGcc -5'
18632 3' -58.5 NC_004682.1 + 29193 0.66 0.546611
Target:  5'- cAGCGcgauccGCUUcauccagGGCCGAGuugaGCCUGCGGg -3'
miRNA:   3'- -UCGCaa----CGGGa------CCGGCUC----UGGAUGCC- -5'
18632 3' -58.5 NC_004682.1 + 5441 0.66 0.525702
Target:  5'- cGCG-UGCgCUGGCCGAucugaagugGGCCggcauCGGc -3'
miRNA:   3'- uCGCaACGgGACCGGCU---------CUGGau---GCC- -5'
18632 3' -58.5 NC_004682.1 + 1560 0.66 0.515361
Target:  5'- uGCGg-GUCCUGGUCGAaGACauggagACGGg -3'
miRNA:   3'- uCGCaaCGGGACCGGCU-CUGga----UGCC- -5'
18632 3' -58.5 NC_004682.1 + 42777 0.66 0.505103
Target:  5'- gGGCGUUGaUCUGGuuGAGgaACUUGCGc -3'
miRNA:   3'- -UCGCAACgGGACCggCUC--UGGAUGCc -5'
18632 3' -58.5 NC_004682.1 + 48531 0.67 0.494933
Target:  5'- -uUGUcGCCCUucGGCCcggacGGACCUugGGg -3'
miRNA:   3'- ucGCAaCGGGA--CCGGc----UCUGGAugCC- -5'
18632 3' -58.5 NC_004682.1 + 48589 0.67 0.494933
Target:  5'- cGCccuucgGCCCUugcgGGCCGgugGGACCUGCuGGg -3'
miRNA:   3'- uCGcaa---CGGGA----CCGGC---UCUGGAUG-CC- -5'
18632 3' -58.5 NC_004682.1 + 4635 0.67 0.484858
Target:  5'- gGGCGacgGCuaCCUGGCCGGuGACCU-CGc -3'
miRNA:   3'- -UCGCaa-CG--GGACCGGCU-CUGGAuGCc -5'
18632 3' -58.5 NC_004682.1 + 48765 0.67 0.484858
Target:  5'- uGCGga-CCCUgcgGGCCGgucGGACCcUGCGGa -3'
miRNA:   3'- uCGCaacGGGA---CCGGC---UCUGG-AUGCC- -5'
18632 3' -58.5 NC_004682.1 + 19600 0.67 0.484858
Target:  5'- -cCGUgGCCCUGGCCGaAGgaggagcuGCCUACc- -3'
miRNA:   3'- ucGCAaCGGGACCGGC-UC--------UGGAUGcc -5'
18632 3' -58.5 NC_004682.1 + 1856 0.67 0.474882
Target:  5'- gGGCuccccgGCCCcaucgGGCCGcaAGGCCcUGCGGg -3'
miRNA:   3'- -UCGcaa---CGGGa----CCGGC--UCUGG-AUGCC- -5'
18632 3' -58.5 NC_004682.1 + 50696 0.67 0.474882
Target:  5'- uGUGUgGCCCUGuGCCGGcccguGCCgGCGGu -3'
miRNA:   3'- uCGCAaCGGGAC-CGGCUc----UGGaUGCC- -5'
18632 3' -58.5 NC_004682.1 + 38745 0.67 0.46501
Target:  5'- aGGCGUUGCCCUGcggacCCGAcGCCgu-GGu -3'
miRNA:   3'- -UCGCAACGGGACc----GGCUcUGGaugCC- -5'
18632 3' -58.5 NC_004682.1 + 10681 0.67 0.46501
Target:  5'- gAGCG-UGUCCUGGCgGcGAuCCUGCu- -3'
miRNA:   3'- -UCGCaACGGGACCGgCuCU-GGAUGcc -5'
18632 3' -58.5 NC_004682.1 + 20128 0.67 0.46501
Target:  5'- cGGCGgUGCuuCCUGGCCGAcgagGGCCaauugAUGGc -3'
miRNA:   3'- -UCGCaACG--GGACCGGCU----CUGGa----UGCC- -5'
18632 3' -58.5 NC_004682.1 + 23851 0.67 0.455245
Target:  5'- uGCGUgaaGUUCgcggaaugGGCUGAGGCCcACGGg -3'
miRNA:   3'- uCGCAa--CGGGa-------CCGGCUCUGGaUGCC- -5'
18632 3' -58.5 NC_004682.1 + 33048 0.68 0.426636
Target:  5'- cGCGgugGCgagGGCCGGGAUgUGCGGu -3'
miRNA:   3'- uCGCaa-CGggaCCGGCUCUGgAUGCC- -5'
18632 3' -58.5 NC_004682.1 + 2632 0.68 0.408168
Target:  5'- aGGcCGgcGUCCUGGUCGAGAC--AUGGg -3'
miRNA:   3'- -UC-GCaaCGGGACCGGCUCUGgaUGCC- -5'
18632 3' -58.5 NC_004682.1 + 1998 0.68 0.399123
Target:  5'- cGGCGguugGCCCc--CCGAGGCCgACGGc -3'
miRNA:   3'- -UCGCaa--CGGGaccGGCUCUGGaUGCC- -5'
18632 3' -58.5 NC_004682.1 + 10356 0.68 0.390207
Target:  5'- uGCc--GCCCUGGCCcGGACCUucuACGa -3'
miRNA:   3'- uCGcaaCGGGACCGGcUCUGGA---UGCc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.