miRNA display CGI


Results 1 - 11 of 11 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18633 3' -62.4 NC_004682.1 + 27177 0.66 0.359356
Target:  5'- aCUcGC-CCCGCAGGaGGGcCGCAGgCCc -3'
miRNA:   3'- -GAcCGaGGGCGUCC-CCUcGCGUCaGG- -5'
18633 3' -62.4 NC_004682.1 + 14966 0.66 0.312474
Target:  5'- aCUGGga-CCGaCAGGGGAGC-UGGUCUa -3'
miRNA:   3'- -GACCgagGGC-GUCCCCUCGcGUCAGG- -5'
18633 3' -62.4 NC_004682.1 + 18265 0.68 0.263177
Target:  5'- cCUGGCUgucggugCCgCGCAGaGGGucgucGGaGCAGUCCg -3'
miRNA:   3'- -GACCGA-------GG-GCGUC-CCC-----UCgCGUCAGG- -5'
18633 3' -62.4 NC_004682.1 + 40337 0.68 0.257399
Target:  5'- gUGGUUCaCCGC-GucGAGCGCGGUCa -3'
miRNA:   3'- gACCGAG-GGCGuCccCUCGCGUCAGg -5'
18633 3' -62.4 NC_004682.1 + 42548 0.68 0.255497
Target:  5'- gUGGCguccacgUCCuCGCGGGGGAccuccccgcucuCGUAGUCCu -3'
miRNA:   3'- gACCG-------AGG-GCGUCCCCUc-----------GCGUCAGG- -5'
18633 3' -62.4 NC_004682.1 + 40224 0.68 0.249858
Target:  5'- gUGGCcacucgcgcccaCCCGCGaaugaugcGGGGAGCGgGGUCg -3'
miRNA:   3'- gACCGa-----------GGGCGU--------CCCCUCGCgUCAGg -5'
18633 3' -62.4 NC_004682.1 + 47211 0.68 0.237102
Target:  5'- uUGGCUgCCUGCAugaacucgaaccucGGGGuGuCGCuGUCCu -3'
miRNA:   3'- gACCGA-GGGCGU--------------CCCCuC-GCGuCAGG- -5'
18633 3' -62.4 NC_004682.1 + 14284 0.69 0.200016
Target:  5'- -cGGCaagCCGCAGGGcGGCG-AGUCCa -3'
miRNA:   3'- gaCCGag-GGCGUCCCcUCGCgUCAGG- -5'
18633 3' -62.4 NC_004682.1 + 28103 0.71 0.158218
Target:  5'- gUGGCUgCUCGCGGcGGcGAGCGCGGa-- -3'
miRNA:   3'- gACCGA-GGGCGUC-CC-CUCGCGUCagg -5'
18633 3' -62.4 NC_004682.1 + 50473 0.74 0.094874
Target:  5'- -gGcGCUCCCGgAGGGGAGCcgcuuggggGCGGcUCCu -3'
miRNA:   3'- gaC-CGAGGGCgUCCCCUCG---------CGUC-AGG- -5'
18633 3' -62.4 NC_004682.1 + 6933 1.11 0.000122
Target:  5'- cCUGGCUCCCGCAGGGGAGCGCAGUCCa -3'
miRNA:   3'- -GACCGAGGGCGUCCCCUCGCGUCAGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.