Results 1 - 7 of 7 are showing below:
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ID | Location | Perfect MFE.* | RefSeq Acc. | strand | Start Position | R_P_ratio# | P value |
Predicted miRNA align pattern | |||||||
18633 | 5' | -57.5 | NC_004682.1 | + | 17416 | 0.66 | 0.537289 |
Target: 5'- -uGGAGUccgguCUGCAGGCgauGGGccAACUCGGu -3' miRNA: 3'- cuCCUCAu----GGCGUCCG---CCC--UUGAGCU- -5' |
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18633 | 5' | -57.5 | NC_004682.1 | + | 29133 | 0.67 | 0.5059 |
Target: 5'- -----aUGCCGCccagAGGCGGGAGgUCGAu -3' miRNA: 3'- cuccucAUGGCG----UCCGCCCUUgAGCU- -5' |
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18633 | 5' | -57.5 | NC_004682.1 | + | 37437 | 0.68 | 0.464342 |
Target: 5'- -cGGGGUAgacgaucacguccUCGUAGGCGGGAccGCcaUCGAg -3' miRNA: 3'- cuCCUCAU-------------GGCGUCCGCCCU--UG--AGCU- -5' |
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18633 | 5' | -57.5 | NC_004682.1 | + | 50482 | 0.69 | 0.389705 |
Target: 5'- gGAGGGGaGCCGCuuggGGGCGGcucCUCGGa -3' miRNA: 3'- -CUCCUCaUGGCG----UCCGCCcuuGAGCU- -5' |
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18633 | 5' | -57.5 | NC_004682.1 | + | 50572 | 0.69 | 0.38083 |
Target: 5'- uGGGGGUACCggguaggcaggGCAGGUGGGGuAC-CGGg -3' miRNA: 3'- cUCCUCAUGG-----------CGUCCGCCCU-UGaGCU- -5' |
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18633 | 5' | -57.5 | NC_004682.1 | + | 27187 | 0.72 | 0.271248 |
Target: 5'- cAGGAGgGCCGCAGGCccgucggucaGGGugUCGAu -3' miRNA: 3'- cUCCUCaUGGCGUCCGc---------CCUugAGCU- -5' |
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18633 | 5' | -57.5 | NC_004682.1 | + | 6970 | 0.96 | 0.005416 |
Target: 5'- gGAGGAGUACCGCAGGC-GGAACUCGAc -3' miRNA: 3'- -CUCCUCAUGGCGUCCGcCCUUGAGCU- -5' |
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Note:
When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.
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