miRNA display CGI


Results 1 - 20 of 20 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18634 3' -63.2 NC_004682.1 + 7155 0.66 0.296459
Target:  5'- gGCUGGGGCgucCUGaaCugGUgGGCUg -3'
miRNA:   3'- -CGACCCCGac-GACgaGugCGgCCGGg -5'
18634 3' -63.2 NC_004682.1 + 26889 0.66 0.295749
Target:  5'- uGCUGGGcGCUGgUGCggacCugGUuguagauCGuGCCCa -3'
miRNA:   3'- -CGACCC-CGACgACGa---GugCG-------GC-CGGG- -5'
18634 3' -63.2 NC_004682.1 + 6280 0.66 0.295042
Target:  5'- cCUGGaGGCggcgaagcgcugGCUGUUCACGguccaCGGCaCCg -3'
miRNA:   3'- cGACC-CCGa-----------CGACGAGUGCg----GCCG-GG- -5'
18634 3' -63.2 NC_004682.1 + 7535 0.66 0.289424
Target:  5'- ---cGGGCUGCUGgUCAa-CCGGUUCa -3'
miRNA:   3'- cgacCCCGACGACgAGUgcGGCCGGG- -5'
18634 3' -63.2 NC_004682.1 + 24177 0.67 0.275748
Target:  5'- -aUGGcGGCgaaGCUGCUCGacgGCUGGUCg -3'
miRNA:   3'- cgACC-CCGa--CGACGAGUg--CGGCCGGg -5'
18634 3' -63.2 NC_004682.1 + 47651 0.67 0.275748
Target:  5'- cGUUGuGGacGCgGUUGCcCGCGCCcuGGCCCg -3'
miRNA:   3'- -CGAC-CC--CGaCGACGaGUGCGG--CCGGG- -5'
18634 3' -63.2 NC_004682.1 + 30384 0.68 0.23782
Target:  5'- cGCUGGagcuuGGCgcucaGCcGCUgCACGCCgggguaGGCCCg -3'
miRNA:   3'- -CGACC-----CCGa----CGaCGA-GUGCGG------CCGGG- -5'
18634 3' -63.2 NC_004682.1 + 33506 0.68 0.23782
Target:  5'- uGCUgcGGGGCcaGCUucGCgaACGCCuGGCCCg -3'
miRNA:   3'- -CGA--CCCCGa-CGA--CGagUGCGG-CCGGG- -5'
18634 3' -63.2 NC_004682.1 + 7326 0.68 0.23782
Target:  5'- gGCUGGGGCaagGacccGUUCGCaGCCGcGCUCu -3'
miRNA:   3'- -CGACCCCGa--Cga--CGAGUG-CGGC-CGGG- -5'
18634 3' -63.2 NC_004682.1 + 1972 0.68 0.220549
Target:  5'- cGCUGGcGGuCUGCUGUaC-CGCUacacggcgguuGGCCCc -3'
miRNA:   3'- -CGACC-CC-GACGACGaGuGCGG-----------CCGGG- -5'
18634 3' -63.2 NC_004682.1 + 10463 0.68 0.209637
Target:  5'- --aGGaGCUGCUGaUCGaGCUGGCCCa -3'
miRNA:   3'- cgaCCcCGACGACgAGUgCGGCCGGG- -5'
18634 3' -63.2 NC_004682.1 + 12492 0.68 0.204358
Target:  5'- aGCcGGGGCUGCaGUUCgccaacACGgUGGCCa -3'
miRNA:   3'- -CGaCCCCGACGaCGAG------UGCgGCCGGg -5'
18634 3' -63.2 NC_004682.1 + 17292 0.69 0.199194
Target:  5'- uGCU-GGGCgaGCUGUUCACuCgGGUCCa -3'
miRNA:   3'- -CGAcCCCGa-CGACGAGUGcGgCCGGG- -5'
18634 3' -63.2 NC_004682.1 + 47756 0.7 0.161426
Target:  5'- uGgUGGGGUagccggGCUgGCUCGCGCCcguuccguuggacGGCCUg -3'
miRNA:   3'- -CgACCCCGa-----CGA-CGAGUGCGG-------------CCGGG- -5'
18634 3' -63.2 NC_004682.1 + 42890 0.7 0.157652
Target:  5'- --cGGGGUagaagcUGCgccacUGCUCuggccCGCCGGCCCc -3'
miRNA:   3'- cgaCCCCG------ACG-----ACGAGu----GCGGCCGGG- -5'
18634 3' -63.2 NC_004682.1 + 22552 0.71 0.138107
Target:  5'- cGUUGGGuGUcGaaGgaCACGCCGGCCCc -3'
miRNA:   3'- -CGACCC-CGaCgaCgaGUGCGGCCGGG- -5'
18634 3' -63.2 NC_004682.1 + 10171 0.71 0.124433
Target:  5'- gGCUgaGGaGGCUGCUGCgugacguuggaagagUACGCC-GCCCa -3'
miRNA:   3'- -CGA--CC-CCGACGACGa--------------GUGCGGcCGGG- -5'
18634 3' -63.2 NC_004682.1 + 47696 0.73 0.102715
Target:  5'- aGUUGGcGGCUGCUGCgC-CGCCuGCgCCa -3'
miRNA:   3'- -CGACC-CCGACGACGaGuGCGGcCG-GG- -5'
18634 3' -63.2 NC_004682.1 + 28094 0.77 0.048704
Target:  5'- cGCUcGGGCgugGCUGCUCGCGgCGGCg- -3'
miRNA:   3'- -CGAcCCCGa--CGACGAGUGCgGCCGgg -5'
18634 3' -63.2 NC_004682.1 + 5277 1.12 0.000093
Target:  5'- cGCUGGGGCUGCUGCUCACGCCGGCCCc -3'
miRNA:   3'- -CGACCCCGACGACGAGUGCGGCCGGG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.