miRNA display CGI


Results 1 - 20 of 24 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18634 5' -52.8 NC_004682.1 + 40445 0.66 0.84573
Target:  5'- -gGGGUCCAGCUccggGUGGuggagugcgcguugaGCGUCGUAGa -3'
miRNA:   3'- cgCCCAGGUUGAa---CACU---------------UGUGGCGUC- -5'
18634 5' -52.8 NC_004682.1 + 34092 0.66 0.842188
Target:  5'- cCGGGU-CGACguuggcgGUGAaggACACCGCGu -3'
miRNA:   3'- cGCCCAgGUUGaa-----CACU---UGUGGCGUc -5'
18634 5' -52.8 NC_004682.1 + 46684 0.66 0.842188
Target:  5'- cGCGGGacgCCGAagaUGUGcAGCACCGgGu -3'
miRNA:   3'- -CGCCCa--GGUUga-ACAC-UUGUGGCgUc -5'
18634 5' -52.8 NC_004682.1 + 2069 0.66 0.842188
Target:  5'- cGCaGGGUCCGACc----GGC-CCGCAGg -3'
miRNA:   3'- -CG-CCCAGGUUGaacacUUGuGGCGUC- -5'
18634 5' -52.8 NC_004682.1 + 9555 0.66 0.823937
Target:  5'- uGCGGGUCUccacgGUGAAgaACCGUGGu -3'
miRNA:   3'- -CGCCCAGGuugaaCACUUg-UGGCGUC- -5'
18634 5' -52.8 NC_004682.1 + 9322 0.66 0.823937
Target:  5'- aGUGGGUCCAGgUcGcGAACGUCGCGc -3'
miRNA:   3'- -CGCCCAGGUUgAaCaCUUGUGGCGUc -5'
18634 5' -52.8 NC_004682.1 + 29649 0.66 0.823937
Target:  5'- uGCGGGUCUucgccguggagguAGCgccgacacacgaugGUGAGCugCGCGu -3'
miRNA:   3'- -CGCCCAGG-------------UUGaa------------CACUUGugGCGUc -5'
18634 5' -52.8 NC_004682.1 + 48720 0.66 0.823937
Target:  5'- uCGGGgCCGGCUUcuccgGUGAACcCuCGCGGa -3'
miRNA:   3'- cGCCCaGGUUGAA-----CACUUGuG-GCGUC- -5'
18634 5' -52.8 NC_004682.1 + 48899 0.66 0.823001
Target:  5'- uCGGG-CCuugcGCUUGUcgcaguccuugacGAACGCCGCGa -3'
miRNA:   3'- cGCCCaGGu---UGAACA-------------CUUGUGGCGUc -5'
18634 5' -52.8 NC_004682.1 + 33244 0.66 0.821125
Target:  5'- aGCGuGUCCGcgagcguggugaacGCUggcGUGAGCGCCGUg- -3'
miRNA:   3'- -CGCcCAGGU--------------UGAa--CACUUGUGGCGuc -5'
18634 5' -52.8 NC_004682.1 + 41265 0.66 0.818294
Target:  5'- aCGGGUCCGACcggccaccacgguucUUcaccGUGGAgAcCCGCAGg -3'
miRNA:   3'- cGCCCAGGUUG---------------AA----CACUUgU-GGCGUC- -5'
18634 5' -52.8 NC_004682.1 + 815 0.66 0.814491
Target:  5'- aGUGGGUgCggUgaacaaaGUGGAUAUCGCGGa -3'
miRNA:   3'- -CGCCCAgGuuGaa-----CACUUGUGGCGUC- -5'
18634 5' -52.8 NC_004682.1 + 30041 0.66 0.814491
Target:  5'- uGCGGGUCaGAa--GUcAGCGCCGUAGa -3'
miRNA:   3'- -CGCCCAGgUUgaaCAcUUGUGGCGUC- -5'
18634 5' -52.8 NC_004682.1 + 33509 0.67 0.774821
Target:  5'- uGCGGGgCCAGCUUcGcGAACGCCu--- -3'
miRNA:   3'- -CGCCCaGGUUGAA-CaCUUGUGGcguc -5'
18634 5' -52.8 NC_004682.1 + 10862 0.67 0.76449
Target:  5'- aGCGGGcucUCCGG-UUGUGGAUcgaCGCAGg -3'
miRNA:   3'- -CGCCC---AGGUUgAACACUUGug-GCGUC- -5'
18634 5' -52.8 NC_004682.1 + 4191 0.67 0.754017
Target:  5'- -aGGGUCCAGUUccUGUGGgagauccuGCGcCCGCAGa -3'
miRNA:   3'- cgCCCAGGUUGA--ACACU--------UGU-GGCGUC- -5'
18634 5' -52.8 NC_004682.1 + 46426 0.68 0.710951
Target:  5'- cCGGGgauguagucggUCAGCUUGUcGGCACCGCGc -3'
miRNA:   3'- cGCCCa----------GGUUGAACAcUUGUGGCGUc -5'
18634 5' -52.8 NC_004682.1 + 33619 0.68 0.710951
Target:  5'- -aGGGUCaggaaCGACUgcGUGAACugguugGCCGCAGg -3'
miRNA:   3'- cgCCCAG-----GUUGAa-CACUUG------UGGCGUC- -5'
18634 5' -52.8 NC_004682.1 + 44462 0.69 0.67776
Target:  5'- aUGGGcugCCAgguguACUUGUcGAGCACCGCc- -3'
miRNA:   3'- cGCCCa--GGU-----UGAACA-CUUGUGGCGuc -5'
18634 5' -52.8 NC_004682.1 + 1195 0.69 0.666591
Target:  5'- cCGGGUCCAACUUGaGAuCGa-GCGGa -3'
miRNA:   3'- cGCCCAGGUUGAACaCUuGUggCGUC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.