miRNA display CGI


Results 1 - 20 of 74 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18635 3' -53 NC_004682.1 + 22723 0.66 0.827453
Target:  5'- uCGAGGUcucuguccgcgcucGCcgCcGCgagCAGCCACGCCc -3'
miRNA:   3'- -GCUUCG--------------UGuaGcCGaa-GUCGGUGUGG- -5'
18635 3' -53 NC_004682.1 + 32589 0.66 0.820908
Target:  5'- gGAAcGgAUcUCGGCgUCAGCCGCcucauGCCa -3'
miRNA:   3'- gCUU-CgUGuAGCCGaAGUCGGUG-----UGG- -5'
18635 3' -53 NC_004682.1 + 45862 0.66 0.820908
Target:  5'- gGAAGcCGCuGUCGGCgaucCAGaCCGC-CCg -3'
miRNA:   3'- gCUUC-GUG-UAGCCGaa--GUC-GGUGuGG- -5'
18635 3' -53 NC_004682.1 + 6144 0.66 0.811382
Target:  5'- aGgcGUACGaCGGCg--GGCCGCugCg -3'
miRNA:   3'- gCuuCGUGUaGCCGaagUCGGUGugG- -5'
18635 3' -53 NC_004682.1 + 7406 0.66 0.811382
Target:  5'- aGAcGGCAaucCGGUgggcaAGCCACGCCa -3'
miRNA:   3'- gCU-UCGUguaGCCGaag--UCGGUGUGG- -5'
18635 3' -53 NC_004682.1 + 134 0.66 0.811382
Target:  5'- uCGAccgccGGCACGggcCGGCacagGGCCACACa -3'
miRNA:   3'- -GCU-----UCGUGUa--GCCGaag-UCGGUGUGg -5'
18635 3' -53 NC_004682.1 + 13167 0.66 0.811382
Target:  5'- aGcAAGCGCAUCGuCgucaUCAGCgACACg -3'
miRNA:   3'- gC-UUCGUGUAGCcGa---AGUCGgUGUGg -5'
18635 3' -53 NC_004682.1 + 33127 0.66 0.811382
Target:  5'- cCGggGauCAUCGGCUggaUCuGCUgcaGCGCCg -3'
miRNA:   3'- -GCuuCguGUAGCCGA---AGuCGG---UGUGG- -5'
18635 3' -53 NC_004682.1 + 15573 0.66 0.811382
Target:  5'- gCGAAGCugAagacguUCGGCggCacggccucggGGCCGCuGCCg -3'
miRNA:   3'- -GCUUCGugU------AGCCGaaG----------UCGGUG-UGG- -5'
18635 3' -53 NC_004682.1 + 45320 0.66 0.80166
Target:  5'- -cGGGCagACAcCGGUUUCGGUCAUACUc -3'
miRNA:   3'- gcUUCG--UGUaGCCGAAGUCGGUGUGG- -5'
18635 3' -53 NC_004682.1 + 25984 0.66 0.80166
Target:  5'- uCGAAGUAgAUCcGCUcguccUCAGCCGuCGCg -3'
miRNA:   3'- -GCUUCGUgUAGcCGA-----AGUCGGU-GUGg -5'
18635 3' -53 NC_004682.1 + 29097 0.66 0.80166
Target:  5'- aGAugucGGCgGgGUCGGCUUCgAGCUuCGCCc -3'
miRNA:   3'- gCU----UCG-UgUAGCCGAAG-UCGGuGUGG- -5'
18635 3' -53 NC_004682.1 + 35501 0.66 0.80166
Target:  5'- gCGGAGCACGaCGGCgUCGucGCCuC-CCa -3'
miRNA:   3'- -GCUUCGUGUaGCCGaAGU--CGGuGuGG- -5'
18635 3' -53 NC_004682.1 + 29059 0.66 0.80166
Target:  5'- aGGAGUAg--CGGC-UCAGCCAU-CCa -3'
miRNA:   3'- gCUUCGUguaGCCGaAGUCGGUGuGG- -5'
18635 3' -53 NC_004682.1 + 872 0.66 0.800677
Target:  5'- cCGGAGCAgcaugcuCAUCGGga-CGGCCACAg- -3'
miRNA:   3'- -GCUUCGU-------GUAGCCgaaGUCGGUGUgg -5'
18635 3' -53 NC_004682.1 + 45685 0.66 0.791752
Target:  5'- uCGGccAGCACGUgGGCcugUUCGGCUcccuccuCGCCg -3'
miRNA:   3'- -GCU--UCGUGUAgCCG---AAGUCGGu------GUGG- -5'
18635 3' -53 NC_004682.1 + 3860 0.66 0.791752
Target:  5'- aGAAGCAgGUCGccaaGCUgcugcGCCACGCg -3'
miRNA:   3'- gCUUCGUgUAGC----CGAagu--CGGUGUGg -5'
18635 3' -53 NC_004682.1 + 10238 0.66 0.791752
Target:  5'- aCGcGGCACugcaUGGCUcgGGCCAuCGCCg -3'
miRNA:   3'- -GCuUCGUGua--GCCGAagUCGGU-GUGG- -5'
18635 3' -53 NC_004682.1 + 12979 0.66 0.791752
Target:  5'- uCGggGUACcUCGGC--CAGCCgaucaacgACAUCg -3'
miRNA:   3'- -GCuuCGUGuAGCCGaaGUCGG--------UGUGG- -5'
18635 3' -53 NC_004682.1 + 4983 0.66 0.78167
Target:  5'- gGAucGcCACAgCGGCUUcCAGCCGCAg- -3'
miRNA:   3'- gCUu-C-GUGUaGCCGAA-GUCGGUGUgg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.