miRNA display CGI


Results 1 - 15 of 15 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18635 5' -60.4 NC_004682.1 + 50382 0.66 0.439011
Target:  5'- uGGAGGccGCUGGAUAccGGCCCugGa- -3'
miRNA:   3'- uCCUCCcuCGGCUUGU--CCGGGugCac -5'
18635 5' -60.4 NC_004682.1 + 49089 0.66 0.438064
Target:  5'- cAGGAGaacuGCCGAcccgaugGCAGGCCgaACGUGu -3'
miRNA:   3'- -UCCUCccu-CGGCU-------UGUCCGGg-UGCAC- -5'
18635 5' -60.4 NC_004682.1 + 26946 0.66 0.420309
Target:  5'- uGGGGGuGuGGCCGGugcccguCAGGCCCAgGa- -3'
miRNA:   3'- uCCUCC-C-UCGGCUu------GUCCGGGUgCac -5'
18635 5' -60.4 NC_004682.1 + 8761 0.66 0.402098
Target:  5'- cAGGAGaacguGGAcCCGGAgaAGGCCCGCGa- -3'
miRNA:   3'- -UCCUC-----CCUcGGCUUg-UCCGGGUGCac -5'
18635 5' -60.4 NC_004682.1 + 17606 0.67 0.375741
Target:  5'- cGGAGGGGGCUGggUuucGGCCUg---- -3'
miRNA:   3'- uCCUCCCUCGGCuuGu--CCGGGugcac -5'
18635 5' -60.4 NC_004682.1 + 7932 0.67 0.342457
Target:  5'- --cGGGGGGCCG-GCGGGCCaugaGCaGUGg -3'
miRNA:   3'- uccUCCCUCGGCuUGUCCGGg---UG-CAC- -5'
18635 5' -60.4 NC_004682.1 + 21223 0.68 0.318161
Target:  5'- gAGGAucugcgcGGcGAGCUGAACAucGGCCCGCu-- -3'
miRNA:   3'- -UCCU-------CC-CUCGGCUUGU--CCGGGUGcac -5'
18635 5' -60.4 NC_004682.1 + 23656 0.68 0.301718
Target:  5'- cAGGAgaccggcgcgaaguGGGucGCCGAGCAGGgCCACa-- -3'
miRNA:   3'- -UCCU--------------CCCu-CGGCUUGUCCgGGUGcac -5'
18635 5' -60.4 NC_004682.1 + 10495 0.68 0.296626
Target:  5'- cAGGAGGaGGCCGGugacgcagGCGuGGCCCAgGUc -3'
miRNA:   3'- -UCCUCCcUCGGCU--------UGU-CCGGGUgCAc -5'
18635 5' -60.4 NC_004682.1 + 15632 0.69 0.289467
Target:  5'- cGGGGGaAGCCGAGCGcucGCCCGCcUGa -3'
miRNA:   3'- uCCUCCcUCGGCUUGUc--CGGGUGcAC- -5'
18635 5' -60.4 NC_004682.1 + 48994 0.69 0.268806
Target:  5'- gGGGccGGGGAGcCCGAGCAGacGCCCggACGg- -3'
miRNA:   3'- -UCC--UCCCUC-GGCUUGUC--CGGG--UGCac -5'
18635 5' -60.4 NC_004682.1 + 13837 0.69 0.268806
Target:  5'- gAGGccGGAagGCCGAggccaaccuggcACAGGCCCGCGc- -3'
miRNA:   3'- -UCCucCCU--CGGCU------------UGUCCGGGUGCac -5'
18635 5' -60.4 NC_004682.1 + 46643 0.69 0.262189
Target:  5'- cGGGAGGGAGUCGAACc--CUCACGc- -3'
miRNA:   3'- -UCCUCCCUCGGCUUGuccGGGUGCac -5'
18635 5' -60.4 NC_004682.1 + 47756 0.71 0.208475
Target:  5'- uGGuGGGGuAGCCGGGCuGGCUCGCGc- -3'
miRNA:   3'- uCC-UCCC-UCGGCUUGuCCGGGUGCac -5'
18635 5' -60.4 NC_004682.1 + 5145 1.07 0.00039
Target:  5'- gAGGAGGGAGCCGAACAGGCCCACGUGc -3'
miRNA:   3'- -UCCUCCCUCGGCUUGUCCGGGUGCAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.