miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18636 3' -63.7 NC_004682.1 + 28686 0.66 0.307873
Target:  5'- ---aUCGGCG-UGCCGAugccgcccacuCGCGGCgGCg -3'
miRNA:   3'- agcgAGCCGCgACGGCU-----------GCGCCGgUG- -5'
18636 3' -63.7 NC_004682.1 + 45482 0.66 0.307873
Target:  5'- gCGCugUCGGCGUugaUGCCuccgugcucagcGAUGUGcGCCGCa -3'
miRNA:   3'- aGCG--AGCCGCG---ACGG------------CUGCGC-CGGUG- -5'
18636 3' -63.7 NC_004682.1 + 38100 0.66 0.307873
Target:  5'- aUCGCcgUUGGgGaaguugagGCCGACGCGGagCACg -3'
miRNA:   3'- -AGCG--AGCCgCga------CGGCUGCGCCg-GUG- -5'
18636 3' -63.7 NC_004682.1 + 4347 0.66 0.307147
Target:  5'- cCGCUCaccaaGGCGCUGgugaccgccgucaCCGAagcCGCcGCCACg -3'
miRNA:   3'- aGCGAG-----CCGCGAC-------------GGCU---GCGcCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 6514 0.66 0.300668
Target:  5'- cUCGCaaGGCGCgGUgGuCGuCGGCCAg -3'
miRNA:   3'- -AGCGagCCGCGaCGgCuGC-GCCGGUg -5'
18636 3' -63.7 NC_004682.1 + 20094 0.66 0.300668
Target:  5'- -gGCUCaGaCGCUGCCca-GCGGCgACu -3'
miRNA:   3'- agCGAGcC-GCGACGGcugCGCCGgUG- -5'
18636 3' -63.7 NC_004682.1 + 5276 0.66 0.300668
Target:  5'- gCGCUgGG-GCUGCUGcucACGCcGGCCcCg -3'
miRNA:   3'- aGCGAgCCgCGACGGC---UGCG-CCGGuG- -5'
18636 3' -63.7 NC_004682.1 + 10683 0.66 0.293592
Target:  5'- gCGUguccuggCGGCGaucCUGCuCGAUGCuGCCGCa -3'
miRNA:   3'- aGCGa------GCCGC---GACG-GCUGCGcCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 42160 0.66 0.293592
Target:  5'- aUCGCUCGGCc---CCG-CGaGGCCGCg -3'
miRNA:   3'- -AGCGAGCCGcgacGGCuGCgCCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 30390 0.66 0.279834
Target:  5'- -aGCUUGGCGCUcagccgcugcacGCCGGgGUaGGCC-Cg -3'
miRNA:   3'- agCGAGCCGCGA------------CGGCUgCG-CCGGuG- -5'
18636 3' -63.7 NC_004682.1 + 24265 0.66 0.279834
Target:  5'- gUGUUCGGaCGCUGCa-ACGCcGCCAa -3'
miRNA:   3'- aGCGAGCC-GCGACGgcUGCGcCGGUg -5'
18636 3' -63.7 NC_004682.1 + 41453 0.66 0.279834
Target:  5'- aCGCa-GGCGCUcGUCGAC-CGcGCCAUg -3'
miRNA:   3'- aGCGagCCGCGA-CGGCUGcGC-CGGUG- -5'
18636 3' -63.7 NC_004682.1 + 10529 0.66 0.273149
Target:  5'- gUCGgaCGGacuCGCUGCCGuu-CGGUCACa -3'
miRNA:   3'- -AGCgaGCC---GCGACGGCugcGCCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 1403 0.67 0.266593
Target:  5'- cUCGCU-GGUcCU-CUGGCGCGGUCGCg -3'
miRNA:   3'- -AGCGAgCCGcGAcGGCUGCGCCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 33494 0.67 0.253863
Target:  5'- cCGCcagCGGC-CUGCUG-CGgGGCCAg -3'
miRNA:   3'- aGCGa--GCCGcGACGGCuGCgCCGGUg -5'
18636 3' -63.7 NC_004682.1 + 41004 0.67 0.247687
Target:  5'- -aGCUCGGUGCcguagUGCUuGCGCucgaucacgaugGGCCGCu -3'
miRNA:   3'- agCGAGCCGCG-----ACGGcUGCG------------CCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 41979 0.67 0.245859
Target:  5'- aCGCcuaCGGCGUcggGCCGGCGCucggacucauaguaGGCCGu -3'
miRNA:   3'- aGCGa--GCCGCGa--CGGCUGCG--------------CCGGUg -5'
18636 3' -63.7 NC_004682.1 + 14159 0.67 0.241038
Target:  5'- cCGggCGGCGCUGCCuGACGUgaaggugGGCUc- -3'
miRNA:   3'- aGCgaGCCGCGACGG-CUGCG-------CCGGug -5'
18636 3' -63.7 NC_004682.1 + 48013 0.67 0.23571
Target:  5'- gUGcCUUGaGgGCUGCCGuGCGUGGCgACa -3'
miRNA:   3'- aGC-GAGC-CgCGACGGC-UGCGCCGgUG- -5'
18636 3' -63.7 NC_004682.1 + 11803 0.67 0.229905
Target:  5'- cCGuCUCGGCGUcgugGaCCGGCGaGGCCGa -3'
miRNA:   3'- aGC-GAGCCGCGa---C-GGCUGCgCCGGUg -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.