miRNA display CGI


Results 1 - 20 of 47 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18636 3' -63.7 NC_004682.1 + 4713 1.09 0.000131
Target:  5'- gUCGCUCGGCGCUGCCGACGCGGCCACg -3'
miRNA:   3'- -AGCGAGCCGCGACGGCUGCGCCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 4999 0.75 0.06075
Target:  5'- cUCGCcuacuaCGGCGagcaauugGCCGACGCGGUCGCu -3'
miRNA:   3'- -AGCGa-----GCCGCga------CGGCUGCGCCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 17024 0.73 0.094223
Target:  5'- uUCGCuUCGGCccCUGCCGACGacgaGGCC-Ca -3'
miRNA:   3'- -AGCG-AGCCGc-GACGGCUGCg---CCGGuG- -5'
18636 3' -63.7 NC_004682.1 + 8983 0.72 0.099475
Target:  5'- -gGCUCGGCGggGCCGAUaaGGCCGa -3'
miRNA:   3'- agCGAGCCGCgaCGGCUGcgCCGGUg -5'
18636 3' -63.7 NC_004682.1 + 28093 0.72 0.105003
Target:  5'- aCGCUCgGGCGUgGCUGcuCGCGGCgGCg -3'
miRNA:   3'- aGCGAG-CCGCGaCGGCu-GCGCCGgUG- -5'
18636 3' -63.7 NC_004682.1 + 44718 0.71 0.126362
Target:  5'- cUCG-UCGG-GCaUGCCGACGCcgccgguGGCCACg -3'
miRNA:   3'- -AGCgAGCCgCG-ACGGCUGCG-------CCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 486 0.71 0.133624
Target:  5'- cCGCUuccggCGGCGCUcaCCGACGC-GCCGCc -3'
miRNA:   3'- aGCGA-----GCCGCGAc-GGCUGCGcCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 46458 0.71 0.137216
Target:  5'- gCGCUCcGCGC--CCGugGCGGCgGCu -3'
miRNA:   3'- aGCGAGcCGCGacGGCugCGCCGgUG- -5'
18636 3' -63.7 NC_004682.1 + 35095 0.7 0.144666
Target:  5'- aUCGacaUCcGCGCUGaCCGGCGCacaccgccGGCCACc -3'
miRNA:   3'- -AGCg--AGcCGCGAC-GGCUGCG--------CCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 42544 0.7 0.144666
Target:  5'- -gGCUCGGCgGC-GCCucUGCGGCCAa -3'
miRNA:   3'- agCGAGCCG-CGaCGGcuGCGCCGGUg -5'
18636 3' -63.7 NC_004682.1 + 20125 0.7 0.152484
Target:  5'- gUGCggCGGUGCUuccugGCCGACGagGGCCAa -3'
miRNA:   3'- aGCGa-GCCGCGA-----CGGCUGCg-CCGGUg -5'
18636 3' -63.7 NC_004682.1 + 25654 0.69 0.169279
Target:  5'- -aGCUUGGaCGCUGuuGAgUGCGGCgAUg -3'
miRNA:   3'- agCGAGCC-GCGACggCU-GCGCCGgUG- -5'
18636 3' -63.7 NC_004682.1 + 18119 0.69 0.169279
Target:  5'- gCGCagGGCGC-GUCGGacauCGCGGCCAa -3'
miRNA:   3'- aGCGagCCGCGaCGGCU----GCGCCGGUg -5'
18636 3' -63.7 NC_004682.1 + 15585 0.69 0.173729
Target:  5'- aCGUUCGGCgGCacgGCCu-CGgGGCCGCu -3'
miRNA:   3'- aGCGAGCCG-CGa--CGGcuGCgCCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 23427 0.69 0.173729
Target:  5'- gCGCcgaCGGCGauugUGCCGccCGUGGCCACc -3'
miRNA:   3'- aGCGa--GCCGCg---ACGGCu-GCGCCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 49272 0.69 0.173729
Target:  5'- -gGCgUCGGCGUcgGUCGAcucgaccuugauCGUGGCCACg -3'
miRNA:   3'- agCG-AGCCGCGa-CGGCU------------GCGCCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 17250 0.69 0.173729
Target:  5'- -aGCUCGG-GCU-CCGACGCcuucGGCUACc -3'
miRNA:   3'- agCGAGCCgCGAcGGCUGCG----CCGGUG- -5'
18636 3' -63.7 NC_004682.1 + 16903 0.69 0.173729
Target:  5'- gCGUUCGGUGCcggUGUCGGCGCuGUgGCg -3'
miRNA:   3'- aGCGAGCCGCG---ACGGCUGCGcCGgUG- -5'
18636 3' -63.7 NC_004682.1 + 6414 0.69 0.178283
Target:  5'- cCGCUCgGGCGUUcCCGAUGUGGUCc- -3'
miRNA:   3'- aGCGAG-CCGCGAcGGCUGCGCCGGug -5'
18636 3' -63.7 NC_004682.1 + 9436 0.69 0.192093
Target:  5'- uUCGCUCGGUcaccgacgcaGCUGCCcgGACGCugaugcugaugcaGGCgACu -3'
miRNA:   3'- -AGCGAGCCG----------CGACGG--CUGCG-------------CCGgUG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.