miRNA display CGI


Results 1 - 20 of 34 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18636 5' -55.8 NC_004682.1 + 43906 0.66 0.686483
Target:  5'- gGAcUGCCuccccUGCgGGAGCCaGGCGGCUGg -3'
miRNA:   3'- -CUcAUGGu----GCGgCUUCGG-CUGCUGAC- -5'
18636 5' -55.8 NC_004682.1 + 18077 0.66 0.686483
Target:  5'- ---cGCCAgCGCCGAGGCguaCGACGAa-- -3'
miRNA:   3'- cucaUGGU-GCGGCUUCG---GCUGCUgac -5'
18636 5' -55.8 NC_004682.1 + 47623 0.66 0.686483
Target:  5'- -uGUGCCGCGCC---GCCGACGuaGgUGa -3'
miRNA:   3'- cuCAUGGUGCGGcuuCGGCUGC--UgAC- -5'
18636 5' -55.8 NC_004682.1 + 25576 0.66 0.675569
Target:  5'- ---gGCCACGCCGuGGGCCuugacgcgGugGGCUa -3'
miRNA:   3'- cucaUGGUGCGGC-UUCGG--------CugCUGAc -5'
18636 5' -55.8 NC_004682.1 + 34625 0.66 0.664614
Target:  5'- aGGUGgcCCACGCCGAugcGCCGguuGCGAUc- -3'
miRNA:   3'- cUCAU--GGUGCGGCUu--CGGC---UGCUGac -5'
18636 5' -55.8 NC_004682.1 + 49369 0.66 0.653629
Target:  5'- aGGGUGCC-UGCCGGgaAGuuGACGggcucgccGCUGg -3'
miRNA:   3'- -CUCAUGGuGCGGCU--UCggCUGC--------UGAC- -5'
18636 5' -55.8 NC_004682.1 + 9933 0.66 0.653629
Target:  5'- cGGGUGCUGaucaCCGGcAGCCG-CGACUGg -3'
miRNA:   3'- -CUCAUGGUgc--GGCU-UCGGCuGCUGAC- -5'
18636 5' -55.8 NC_004682.1 + 26331 0.66 0.653629
Target:  5'- uAGU-CCGCGCCGAccuGGCUGAUGcCa- -3'
miRNA:   3'- cUCAuGGUGCGGCU---UCGGCUGCuGac -5'
18636 5' -55.8 NC_004682.1 + 20517 0.66 0.653629
Target:  5'- aGAGgGCUAUGCgGgAGGCCGaACGGCUc -3'
miRNA:   3'- -CUCaUGGUGCGgC-UUCGGC-UGCUGAc -5'
18636 5' -55.8 NC_004682.1 + 24403 0.66 0.642624
Target:  5'- cGGUGCUggACGCUGAGGgcaacCCGAucCGGCUGg -3'
miRNA:   3'- cUCAUGG--UGCGGCUUC-----GGCU--GCUGAC- -5'
18636 5' -55.8 NC_004682.1 + 14000 0.66 0.642624
Target:  5'- cAGUgGCCugGggucaUCGAGGCUGACGAcCUGg -3'
miRNA:   3'- cUCA-UGGugC-----GGCUUCGGCUGCU-GAC- -5'
18636 5' -55.8 NC_004682.1 + 37209 0.67 0.631609
Target:  5'- ---cGCCGCGCCGAgGGCCGu--GCUGc -3'
miRNA:   3'- cucaUGGUGCGGCU-UCGGCugcUGAC- -5'
18636 5' -55.8 NC_004682.1 + 24170 0.67 0.620594
Target:  5'- gGAGgacAUgGCGgCGAAGCugcuCGACGGCUGg -3'
miRNA:   3'- -CUCa--UGgUGCgGCUUCG----GCUGCUGAC- -5'
18636 5' -55.8 NC_004682.1 + 15798 0.67 0.60959
Target:  5'- cGGUuCUACGCagaGAAGCgCGGCGGCa- -3'
miRNA:   3'- cUCAuGGUGCGg--CUUCG-GCUGCUGac -5'
18636 5' -55.8 NC_004682.1 + 22186 0.67 0.60959
Target:  5'- uGAGUGCUGaGCCGGuaccgauacaaaGGCCGGC-ACUGg -3'
miRNA:   3'- -CUCAUGGUgCGGCU------------UCGGCUGcUGAC- -5'
18636 5' -55.8 NC_004682.1 + 5907 0.67 0.598605
Target:  5'- -cGU-CCAC-CCGAAGUCGugGGCg- -3'
miRNA:   3'- cuCAuGGUGcGGCUUCGGCugCUGac -5'
18636 5' -55.8 NC_004682.1 + 5032 0.68 0.565858
Target:  5'- cAGUgcGCCACGCUGAucccGCCGAagGGCUa -3'
miRNA:   3'- cUCA--UGGUGCGGCUu---CGGCUg-CUGAc -5'
18636 5' -55.8 NC_004682.1 + 13091 0.68 0.54428
Target:  5'- aGGGcUACC-UGUCGGAGaCCGACGGCa- -3'
miRNA:   3'- -CUC-AUGGuGCGGCUUC-GGCUGCUGac -5'
18636 5' -55.8 NC_004682.1 + 45380 0.68 0.54428
Target:  5'- ---gGCCGCGCCGAuGCCGGCccACUu -3'
miRNA:   3'- cucaUGGUGCGGCUuCGGCUGc-UGAc -5'
18636 5' -55.8 NC_004682.1 + 3696 0.68 0.537858
Target:  5'- cGGaGCCAuCGCCGAAGCCaucauccgcauccucGACGcCUGa -3'
miRNA:   3'- cUCaUGGU-GCGGCUUCGG---------------CUGCuGAC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.