miRNA display CGI


Results 1 - 12 of 12 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18637 3' -54.9 NC_004682.1 + 44841 0.66 0.709867
Target:  5'- aCGCG-GGGUGAGUcgcccGCCGuaaguguguuugauCCAGGAAAc -3'
miRNA:   3'- gGCGUgCCCACUCA-----UGGC--------------GGUCUUUU- -5'
18637 3' -54.9 NC_004682.1 + 1178 0.68 0.591429
Target:  5'- uCCGa--GGGUGAccGCCGCCGGGu-- -3'
miRNA:   3'- -GGCgugCCCACUcaUGGCGGUCUuuu -5'
18637 3' -54.9 NC_004682.1 + 36515 0.68 0.58038
Target:  5'- gCCGCACGGaGgucGAGgACCGCCGc---- -3'
miRNA:   3'- -GGCGUGCC-Ca--CUCaUGGCGGUcuuuu -5'
18637 3' -54.9 NC_004682.1 + 34004 0.69 0.536702
Target:  5'- gCCGaugGCGGGUGca-GCCGCCAcGAAGAc -3'
miRNA:   3'- -GGCg--UGCCCACucaUGGCGGU-CUUUU- -5'
18637 3' -54.9 NC_004682.1 + 23130 0.69 0.515284
Target:  5'- aCCGU-CaGGUGAGUugCGgCCAGGAGc -3'
miRNA:   3'- -GGCGuGcCCACUCAugGC-GGUCUUUu -5'
18637 3' -54.9 NC_004682.1 + 29392 0.69 0.504705
Target:  5'- aC-CACGGcGUGuAGUACuCGCCGGGGAAc -3'
miRNA:   3'- gGcGUGCC-CAC-UCAUG-GCGGUCUUUU- -5'
18637 3' -54.9 NC_004682.1 + 47583 0.7 0.462381
Target:  5'- gCCGCcacCGGGUGGGUugccugcGCCGCCGa---- -3'
miRNA:   3'- -GGCGu--GCCCACUCA-------UGGCGGUcuuuu -5'
18637 3' -54.9 NC_004682.1 + 20269 0.7 0.443408
Target:  5'- aCCGCACGGGccgcGuGgcCCGaCCGGGAGAu -3'
miRNA:   3'- -GGCGUGCCCa---CuCauGGC-GGUCUUUU- -5'
18637 3' -54.9 NC_004682.1 + 48070 0.71 0.414369
Target:  5'- uCCGCgACGGGaucUGGGUGCCGaCgCGGAAc- -3'
miRNA:   3'- -GGCG-UGCCC---ACUCAUGGC-G-GUCUUuu -5'
18637 3' -54.9 NC_004682.1 + 29058 0.72 0.377526
Target:  5'- aCCGCACGGagcGUcGGGUACUccuggaagGCCAGGAAGa -3'
miRNA:   3'- -GGCGUGCC---CA-CUCAUGG--------CGGUCUUUU- -5'
18637 3' -54.9 NC_004682.1 + 50348 0.77 0.164703
Target:  5'- gCgGCGCGucGGUGAGcGCCGCCGGAAGc -3'
miRNA:   3'- -GgCGUGC--CCACUCaUGGCGGUCUUUu -5'
18637 3' -54.9 NC_004682.1 + 4291 1.09 0.001017
Target:  5'- aCCGCACGGGUGAGUACCGCCAGAAAAa -3'
miRNA:   3'- -GGCGUGCCCACUCAUGGCGGUCUUUU- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.