miRNA display CGI


Results 1 - 20 of 54 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18637 5' -58.2 NC_004682.1 + 29498 0.66 0.544927
Target:  5'- cGUCAGC-CAGGAGCcGCCGaaG-GCg -3'
miRNA:   3'- cCGGUCGaGUUCUCGaUGGCggCgCG- -5'
18637 5' -58.2 NC_004682.1 + 70 0.66 0.544926
Target:  5'- aGGCCccguggagaGGCUC-AGAGCcGCCcUCGCGg -3'
miRNA:   3'- -CCGG---------UCGAGuUCUCGaUGGcGGCGCg -5'
18637 5' -58.2 NC_004682.1 + 24048 0.66 0.53436
Target:  5'- cGCguGCUgCGGGGGauggACCGCUGgGCc -3'
miRNA:   3'- cCGguCGA-GUUCUCga--UGGCGGCgCG- -5'
18637 5' -58.2 NC_004682.1 + 18025 0.66 0.513453
Target:  5'- cGCCGGgaCGc-GGCUACUuCCGCGCc -3'
miRNA:   3'- cCGGUCgaGUucUCGAUGGcGGCGCG- -5'
18637 5' -58.2 NC_004682.1 + 33885 0.66 0.503125
Target:  5'- cGCUGGCaUCAGGAcuucgGCUGCCGCCuuGa -3'
miRNA:   3'- cCGGUCG-AGUUCU-----CGAUGGCGGcgCg -5'
18637 5' -58.2 NC_004682.1 + 46516 0.67 0.492889
Target:  5'- cGGCggUAGCUCuuGAGCUgGCCGCUG-GUc -3'
miRNA:   3'- -CCG--GUCGAGuuCUCGA-UGGCGGCgCG- -5'
18637 5' -58.2 NC_004682.1 + 4699 0.67 0.492889
Target:  5'- cGGCCuGaucgagCAGGuGCUggAUCGCCGUGUg -3'
miRNA:   3'- -CCGGuCga----GUUCuCGA--UGGCGGCGCG- -5'
18637 5' -58.2 NC_004682.1 + 26020 0.67 0.492889
Target:  5'- aGGCCGGCgucGGA-CUcCCGCCGUagGCg -3'
miRNA:   3'- -CCGGUCGaguUCUcGAuGGCGGCG--CG- -5'
18637 5' -58.2 NC_004682.1 + 36756 0.67 0.48275
Target:  5'- uGGCCuucGGCUCcAGGGCgaggGCCuuguccaCCGUGCc -3'
miRNA:   3'- -CCGG---UCGAGuUCUCGa---UGGc------GGCGCG- -5'
18637 5' -58.2 NC_004682.1 + 8969 0.67 0.472712
Target:  5'- cGGCCAGCUCGcgcGGucuguGCUgGCC-CCG-GCa -3'
miRNA:   3'- -CCGGUCGAGU---UCu----CGA-UGGcGGCgCG- -5'
18637 5' -58.2 NC_004682.1 + 48841 0.67 0.472712
Target:  5'- cGUCGGcCUCGGGGGgccaACCGCCGuCGUa -3'
miRNA:   3'- cCGGUC-GAGUUCUCga--UGGCGGC-GCG- -5'
18637 5' -58.2 NC_004682.1 + 12021 0.67 0.472712
Target:  5'- aGCCGucugcGUUCAAGGGCUACCugGCCGa-- -3'
miRNA:   3'- cCGGU-----CGAGUUCUCGAUGG--CGGCgcg -5'
18637 5' -58.2 NC_004682.1 + 18618 0.67 0.462781
Target:  5'- cGCCgAGCUgAAGcgaaAGCUG--GCCGCGCa -3'
miRNA:   3'- cCGG-UCGAgUUC----UCGAUggCGGCGCG- -5'
18637 5' -58.2 NC_004682.1 + 34163 0.67 0.462781
Target:  5'- aGGCCca-UCAcc-GCUGCCGCCcgaGCGCa -3'
miRNA:   3'- -CCGGucgAGUucuCGAUGGCGG---CGCG- -5'
18637 5' -58.2 NC_004682.1 + 1652 0.67 0.462781
Target:  5'- uGGCCAGcCUCAagcGGAGCaaugACCGCaagguaGCc -3'
miRNA:   3'- -CCGGUC-GAGU---UCUCGa---UGGCGgcg---CG- -5'
18637 5' -58.2 NC_004682.1 + 45754 0.67 0.45296
Target:  5'- gGGUCGGUgcgggugCGGGAGCaGCCGgUGCGg -3'
miRNA:   3'- -CCGGUCGa------GUUCUCGaUGGCgGCGCg -5'
18637 5' -58.2 NC_004682.1 + 13306 0.67 0.451984
Target:  5'- cGGcCCGGUggagCAAGGGC-ACCGCUGaggaguuCGCg -3'
miRNA:   3'- -CC-GGUCGa---GUUCUCGaUGGCGGC-------GCG- -5'
18637 5' -58.2 NC_004682.1 + 15299 0.67 0.450035
Target:  5'- aGGCCgaccgcgAGUUCGcgccugucaagcuGGAGCUgggaggcgacgacGCCGUCGUGCu -3'
miRNA:   3'- -CCGG-------UCGAGU-------------UCUCGA-------------UGGCGGCGCG- -5'
18637 5' -58.2 NC_004682.1 + 32120 0.67 0.443253
Target:  5'- cGCU-GCUgGAGGGCUGCCuUCGCGg -3'
miRNA:   3'- cCGGuCGAgUUCUCGAUGGcGGCGCg -5'
18637 5' -58.2 NC_004682.1 + 10502 0.68 0.433665
Target:  5'- aGGCCGGUgacgCAGGcGUgGCCcagGUCGCGCu -3'
miRNA:   3'- -CCGGUCGa---GUUCuCGaUGG---CGGCGCG- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.