miRNA display CGI


Results 1 - 20 of 54 are showing below:
Show page: 


<< Previous Page | Next Page >>
ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18638 3' -57.7 NC_004682.1 + 40704 0.66 0.578192
Target:  5'- gGGGCUCaGGCGUuuCCGGguuGUCCGGGUu -3'
miRNA:   3'- -CCCGAG-CUGUAccGGUCg--UAGGUCCG- -5'
18638 3' -57.7 NC_004682.1 + 47161 0.66 0.567403
Target:  5'- uGGCUcCGAUGUGGCCuccgucgguGCcgCCucgucGGCg -3'
miRNA:   3'- cCCGA-GCUGUACCGGu--------CGuaGGu----CCG- -5'
18638 3' -57.7 NC_004682.1 + 17838 0.66 0.567403
Target:  5'- --cCUCGACGUgGGCCaugagAGCGUCCuGGa -3'
miRNA:   3'- cccGAGCUGUA-CCGG-----UCGUAGGuCCg -5'
18638 3' -57.7 NC_004682.1 + 41368 0.66 0.567403
Target:  5'- -aGCUCuGCAgucGCCugcaucagcaucAGCGUCCGGGCa -3'
miRNA:   3'- ccCGAGcUGUac-CGG------------UCGUAGGUCCG- -5'
18638 3' -57.7 NC_004682.1 + 17254 0.66 0.556667
Target:  5'- cGGGCUcCGACGccuucGGCUAccuGUCCGGGUc -3'
miRNA:   3'- -CCCGA-GCUGUa----CCGGUcg-UAGGUCCG- -5'
18638 3' -57.7 NC_004682.1 + 17074 0.66 0.556667
Target:  5'- cGGGCaugcagGGCGUGGCUcagGGCAuggucuccauguUCCAaGGCg -3'
miRNA:   3'- -CCCGag----CUGUACCGG---UCGU------------AGGU-CCG- -5'
18638 3' -57.7 NC_004682.1 + 18156 0.66 0.556667
Target:  5'- -aGCUaccCGGCAUGGUCaagAGCGcUCUGGGCg -3'
miRNA:   3'- ccCGA---GCUGUACCGG---UCGU-AGGUCCG- -5'
18638 3' -57.7 NC_004682.1 + 16538 0.66 0.54599
Target:  5'- aGGCUUGGC-UGcGCCAGCAggacaagacccUgacggccaaCCAGGCu -3'
miRNA:   3'- cCCGAGCUGuAC-CGGUCGU-----------A---------GGUCCG- -5'
18638 3' -57.7 NC_004682.1 + 47272 0.66 0.54599
Target:  5'- gGGGCaagccUCGGaucuccucGGCCAGCG-CCAGGa -3'
miRNA:   3'- -CCCG-----AGCUgua-----CCGGUCGUaGGUCCg -5'
18638 3' -57.7 NC_004682.1 + 19713 0.66 0.54599
Target:  5'- -uGCUCGACGUGGaguaCAGCGagaagcucUCCgAGGa -3'
miRNA:   3'- ccCGAGCUGUACCg---GUCGU--------AGG-UCCg -5'
18638 3' -57.7 NC_004682.1 + 6234 0.66 0.535379
Target:  5'- aGGuGgUCGACGgugaGGUCAGUGacgccgaccUCCGGGCu -3'
miRNA:   3'- -CC-CgAGCUGUa---CCGGUCGU---------AGGUCCG- -5'
18638 3' -57.7 NC_004682.1 + 46487 0.66 0.524842
Target:  5'- cGGuCUgGGCGaaGCCuGCgAUCCAGGCg -3'
miRNA:   3'- cCC-GAgCUGUacCGGuCG-UAGGUCCG- -5'
18638 3' -57.7 NC_004682.1 + 43660 0.66 0.524842
Target:  5'- --cUUCGGgGUGGCCuucgGUCCAGGCg -3'
miRNA:   3'- cccGAGCUgUACCGGucg-UAGGUCCG- -5'
18638 3' -57.7 NC_004682.1 + 45246 0.66 0.524842
Target:  5'- cGGGCgauccgcucuUCGAUGUGGUUGGCGcgUCCGGuGUu -3'
miRNA:   3'- -CCCG----------AGCUGUACCGGUCGU--AGGUC-CG- -5'
18638 3' -57.7 NC_004682.1 + 25868 0.67 0.514384
Target:  5'- cGGCUUGcACGUagucGCCcGCGUUCAGGUa -3'
miRNA:   3'- cCCGAGC-UGUAc---CGGuCGUAGGUCCG- -5'
18638 3' -57.7 NC_004682.1 + 16230 0.67 0.514384
Target:  5'- uGGGCcaccUCGGCGUGGCgucguUCCuGGCg -3'
miRNA:   3'- -CCCG----AGCUGUACCGgucguAGGuCCG- -5'
18638 3' -57.7 NC_004682.1 + 16841 0.67 0.514384
Target:  5'- cGGCugcacccgccaUCGGCcugGUGGCUGGCcUCCuGGCu -3'
miRNA:   3'- cCCG-----------AGCUG---UACCGGUCGuAGGuCCG- -5'
18638 3' -57.7 NC_004682.1 + 13576 0.67 0.513343
Target:  5'- cGGGCUgguugaccacccaCGGCcaccGUGG-CGGCAUCC-GGCu -3'
miRNA:   3'- -CCCGA-------------GCUG----UACCgGUCGUAGGuCCG- -5'
18638 3' -57.7 NC_004682.1 + 4830 0.67 0.504012
Target:  5'- cGGGCUaCGGCGUGGUCAuGaa-CUGGGUc -3'
miRNA:   3'- -CCCGA-GCUGUACCGGU-CguaGGUCCG- -5'
18638 3' -57.7 NC_004682.1 + 11988 0.67 0.493732
Target:  5'- -aGUUCGACGcGGCUGcCAUCCAcGGCa -3'
miRNA:   3'- ccCGAGCUGUaCCGGUcGUAGGU-CCG- -5' 
<< Previous Page | Next Page >>

Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

Back To miRNA display CGI home


TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.