miRNA display CGI


Results 1 - 20 of 27 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18638 5' -57.7 NC_004682.1 + 12259 0.66 0.563395
Target:  5'- aGGGCaUGGcaaguacaugacgcAgGCCGGUGACcgGCCaCGg -3'
miRNA:   3'- -UCCGaACC--------------UgUGGUCGCUGuaCGG-GC- -5'
18638 5' -57.7 NC_004682.1 + 2673 0.66 0.555856
Target:  5'- cGGUgUGG-CGgCAGCGACcucUGCCUGg -3'
miRNA:   3'- uCCGaACCuGUgGUCGCUGu--ACGGGC- -5'
18638 5' -57.7 NC_004682.1 + 14008 0.66 0.555856
Target:  5'- cGGUgUGuucGGCcCCGGCGGCAUGUUCGg -3'
miRNA:   3'- uCCGaAC---CUGuGGUCGCUGUACGGGC- -5'
18638 5' -57.7 NC_004682.1 + 36134 0.66 0.545139
Target:  5'- cGGGCaUGu-CGCCAcGCGACGUGUggCCGa -3'
miRNA:   3'- -UCCGaACcuGUGGU-CGCUGUACG--GGC- -5'
18638 5' -57.7 NC_004682.1 + 6766 0.66 0.534489
Target:  5'- cAGGCUUGGAguuccaccacCGCCuGCGGCG-GCUUc -3'
miRNA:   3'- -UCCGAACCU----------GUGGuCGCUGUaCGGGc -5'
18638 5' -57.7 NC_004682.1 + 50399 0.66 0.531308
Target:  5'- cGGCccUGGAgGCCGGUucuaugucaaguauGACcgGCCCu -3'
miRNA:   3'- uCCGa-ACCUgUGGUCG--------------CUGuaCGGGc -5'
18638 5' -57.7 NC_004682.1 + 37062 0.66 0.513419
Target:  5'- gAGGUagUGGGC-CUGGCG-CAUGUCCa -3'
miRNA:   3'- -UCCGa-ACCUGuGGUCGCuGUACGGGc -5'
18638 5' -57.7 NC_004682.1 + 20561 0.66 0.513419
Target:  5'- cGGCUcUGGAa--CGGCGACAUGgUCCu -3'
miRNA:   3'- uCCGA-ACCUgugGUCGCUGUAC-GGGc -5'
18638 5' -57.7 NC_004682.1 + 19952 0.67 0.492698
Target:  5'- aGGGC---GACACaCAGCGGcCAUcGCCCGc -3'
miRNA:   3'- -UCCGaacCUGUG-GUCGCU-GUA-CGGGC- -5'
18638 5' -57.7 NC_004682.1 + 5403 0.67 0.482482
Target:  5'- cGGCcUGGugACCGacccCGACGUGUUCGu -3'
miRNA:   3'- uCCGaACCugUGGUc---GCUGUACGGGC- -5'
18638 5' -57.7 NC_004682.1 + 23889 0.67 0.482482
Target:  5'- uGGGCcugacGGGCACCGGCcACAccCCCGa -3'
miRNA:   3'- -UCCGaa---CCUGUGGUCGcUGUacGGGC- -5'
18638 5' -57.7 NC_004682.1 + 32260 0.67 0.452474
Target:  5'- uGGGCUcguaGCGCCAGaGACGcUGCCCGc -3'
miRNA:   3'- -UCCGAacc-UGUGGUCgCUGU-ACGGGC- -5'
18638 5' -57.7 NC_004682.1 + 48371 0.68 0.423512
Target:  5'- gGGGcCUUGGGCACCuGUGGCA---CCGg -3'
miRNA:   3'- -UCC-GAACCUGUGGuCGCUGUacgGGC- -5'
18638 5' -57.7 NC_004682.1 + 19138 0.68 0.423512
Target:  5'- cGGGC-UGGACAUcuaCAGCGACGacuuccguUGCCg- -3'
miRNA:   3'- -UCCGaACCUGUG---GUCGCUGU--------ACGGgc -5'
18638 5' -57.7 NC_004682.1 + 43107 0.68 0.414108
Target:  5'- cAGGCgacGGGCACCGGgGAUcuuggucagguUGCCCu -3'
miRNA:   3'- -UCCGaa-CCUGUGGUCgCUGu----------ACGGGc -5'
18638 5' -57.7 NC_004682.1 + 21827 0.69 0.386681
Target:  5'- -cGCUgcUGGAgACCAGCGAgAcggGCCUGg -3'
miRNA:   3'- ucCGA--ACCUgUGGUCGCUgUa--CGGGC- -5'
18638 5' -57.7 NC_004682.1 + 7097 0.69 0.386681
Target:  5'- cGGGCcuacgUGGGCACgcacugucgaCGGCGGCugguaccUGCCCGa -3'
miRNA:   3'- -UCCGa----ACCUGUG----------GUCGCUGu------ACGGGC- -5'
18638 5' -57.7 NC_004682.1 + 1454 0.69 0.36048
Target:  5'- ------cGACGCCAGCGGCGaGCCCGu -3'
miRNA:   3'- uccgaacCUGUGGUCGCUGUaCGGGC- -5'
18638 5' -57.7 NC_004682.1 + 15723 0.71 0.261685
Target:  5'- cAGuGCgUGGugGCCGGCGGUGUGCgCCGg -3'
miRNA:   3'- -UC-CGaACCugUGGUCGCUGUACG-GGC- -5'
18638 5' -57.7 NC_004682.1 + 2504 0.72 0.236065
Target:  5'- aGGGCgacaaagGuGACACUGGCGAUAcagGCCCGa -3'
miRNA:   3'- -UCCGaa-----C-CUGUGGUCGCUGUa--CGGGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.