miRNA display CGI


Results 1 - 20 of 36 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18639 3' -61.8 NC_004682.1 + 42182 0.66 0.437215
Target:  5'- gCGCCGaacGCGAGGaCcGCGCaGACGGcGGc -3'
miRNA:   3'- -GCGGC---UGCUCC-GcCGUGgCUGCCuCC- -5'
18639 3' -61.8 NC_004682.1 + 33939 0.66 0.42812
Target:  5'- gCGCCGACaccGGCaccgaacGCGCCGAUGagcGAGGg -3'
miRNA:   3'- -GCGGCUGcu-CCGc------CGUGGCUGC---CUCC- -5'
18639 3' -61.8 NC_004682.1 + 29134 0.66 0.425413
Target:  5'- uGCCGcccaGAGGCGGgaggucgauggcacCACCGACugcaccGAGGg -3'
miRNA:   3'- gCGGCug--CUCCGCC--------------GUGGCUGc-----CUCC- -5'
18639 3' -61.8 NC_004682.1 + 40147 0.66 0.419138
Target:  5'- gGCCGGCGuuGGUGGCcCCGA-GGuacacAGGc -3'
miRNA:   3'- gCGGCUGCu-CCGCCGuGGCUgCC-----UCC- -5'
18639 3' -61.8 NC_004682.1 + 49096 0.66 0.418246
Target:  5'- -cCCGACGAucuugccGGuCGGCguGCCGACGuAGGa -3'
miRNA:   3'- gcGGCUGCU-------CC-GCCG--UGGCUGCcUCC- -5'
18639 3' -61.8 NC_004682.1 + 16660 0.66 0.410271
Target:  5'- gCGCUGcGCGgcaugcgcucGGGCGGCAgCGGugaugggccUGGAGGg -3'
miRNA:   3'- -GCGGC-UGC----------UCCGCCGUgGCU---------GCCUCC- -5'
18639 3' -61.8 NC_004682.1 + 46161 0.66 0.410271
Target:  5'- gGCCGACGuAGuCGGUGCCGucGCGGucGu -3'
miRNA:   3'- gCGGCUGC-UCcGCCGUGGC--UGCCucC- -5'
18639 3' -61.8 NC_004682.1 + 13302 0.66 0.410271
Target:  5'- aCGCCGGCccGGUggagcaagGGCACCG-CuGAGGa -3'
miRNA:   3'- -GCGGCUGcuCCG--------CCGUGGCuGcCUCC- -5'
18639 3' -61.8 NC_004682.1 + 5022 0.66 0.410271
Target:  5'- gGCCGACgcggucgcuGAGGCucuaGGCAUCaa-GGAGGa -3'
miRNA:   3'- gCGGCUG---------CUCCG----CCGUGGcugCCUCC- -5'
18639 3' -61.8 NC_004682.1 + 4764 0.66 0.39633
Target:  5'- aGCCGACGAcuGCGgagaccagcacugccGCugCGACGacGAGGa -3'
miRNA:   3'- gCGGCUGCUc-CGC---------------CGugGCUGC--CUCC- -5'
18639 3' -61.8 NC_004682.1 + 16482 0.66 0.390328
Target:  5'- gCGCCGACGAGGCGcgaacuacguccguGaguuCACCGACGcccuacGGa -3'
miRNA:   3'- -GCGGCUGCUCCGC--------------C----GUGGCUGCcu----CC- -5'
18639 3' -61.8 NC_004682.1 + 32566 0.66 0.384385
Target:  5'- -uCCGACGAcccucuGcGCGGCACCGACaGccAGGu -3'
miRNA:   3'- gcGGCUGCU------C-CGCCGUGGCUGcC--UCC- -5'
18639 3' -61.8 NC_004682.1 + 9002 0.67 0.376
Target:  5'- gGCCGACGAGcaguuGUGGgACUGGUGGcAGGc -3'
miRNA:   3'- gCGGCUGCUC-----CGCCgUGGCUGCC-UCC- -5'
18639 3' -61.8 NC_004682.1 + 31674 0.67 0.367739
Target:  5'- uGCCGAacuggaCGAGGCGGCA---ACGGAa- -3'
miRNA:   3'- gCGGCU------GCUCCGCCGUggcUGCCUcc -5'
18639 3' -61.8 NC_004682.1 + 35677 0.67 0.359604
Target:  5'- aCGCCuGAUGcccacAGGUGGCguccACCGG-GGAGGa -3'
miRNA:   3'- -GCGG-CUGC-----UCCGCCG----UGGCUgCCUCC- -5'
18639 3' -61.8 NC_004682.1 + 29100 0.67 0.351595
Target:  5'- uGUCGGCGGGGuCGGCuuCGAgcuucgccCGGAGu -3'
miRNA:   3'- gCGGCUGCUCC-GCCGugGCU--------GCCUCc -5'
18639 3' -61.8 NC_004682.1 + 1107 0.67 0.343714
Target:  5'- aGCaCGcgauuCGGGGCuGGCGCuUGACGuGAGGg -3'
miRNA:   3'- gCG-GCu----GCUCCG-CCGUG-GCUGC-CUCC- -5'
18639 3' -61.8 NC_004682.1 + 2668 0.67 0.343714
Target:  5'- uCGcCCGGUGuGGCGGCAgCGACcucugccuGGGGGc -3'
miRNA:   3'- -GC-GGCUGCuCCGCCGUgGCUG--------CCUCC- -5'
18639 3' -61.8 NC_004682.1 + 18239 0.68 0.32084
Target:  5'- cCGCUGGCauGAGGCGGCugacGCCGAgauccguucccUGGcAGGc -3'
miRNA:   3'- -GCGGCUG--CUCCGCCG----UGGCU-----------GCC-UCC- -5'
18639 3' -61.8 NC_004682.1 + 22144 0.68 0.313473
Target:  5'- cCGCCGccGCGAgugGGCGGCAUCGGCa---- -3'
miRNA:   3'- -GCGGC--UGCU---CCGCCGUGGCUGccucc -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.