miRNA display CGI


Results 1 - 20 of 37 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18639 5' -56.4 NC_004682.1 + 43556 0.66 0.627794
Target:  5'- uGCCcucgcgguagacguaGUUGCCGuuGUCAUCGaCCGCGu -3'
miRNA:   3'- uCGG---------------UAGCGGCuuCGGUAGUaGGCGU- -5'
18639 5' -56.4 NC_004682.1 + 6418 0.66 0.623357
Target:  5'- cGCUugGUCuGcCCGAucCCGUCGUCCGCGu -3'
miRNA:   3'- uCGG--UAG-C-GGCUucGGUAGUAGGCGU- -5'
18639 5' -56.4 NC_004682.1 + 48838 0.66 0.623357
Target:  5'- cGCCGUCgGCCucggGggGCCAaCcgCCGUc -3'
miRNA:   3'- uCGGUAG-CGG----CuuCGGUaGuaGGCGu -5'
18639 5' -56.4 NC_004682.1 + 13838 0.66 0.623357
Target:  5'- aGGCCGgaagGCCGAGGCCAaccuggcaCAggcCCGCGc -3'
miRNA:   3'- -UCGGUag--CGGCUUCGGUa-------GUa--GGCGU- -5'
18639 5' -56.4 NC_004682.1 + 32316 0.66 0.612271
Target:  5'- uGUCcgCGagCGAGGCCAUCuggcUCUGCAu -3'
miRNA:   3'- uCGGuaGCg-GCUUCGGUAGu---AGGCGU- -5'
18639 5' -56.4 NC_004682.1 + 19936 0.66 0.612271
Target:  5'- -cCCGcUCGCCGAGGCgAUCA-CCGa- -3'
miRNA:   3'- ucGGU-AGCGGCUUCGgUAGUaGGCgu -5'
18639 5' -56.4 NC_004682.1 + 22252 0.66 0.612271
Target:  5'- aGGCCGgaUCGCucCGguGCCAUCuggGUCCGUu -3'
miRNA:   3'- -UCGGU--AGCG--GCuuCGGUAG---UAGGCGu -5'
18639 5' -56.4 NC_004682.1 + 34313 0.66 0.612271
Target:  5'- uAGCCcugcCGcCCGuagucGGCCAgCAUCCGCGu -3'
miRNA:   3'- -UCGGua--GC-GGCu----UCGGUaGUAGGCGU- -5'
18639 5' -56.4 NC_004682.1 + 4954 0.66 0.611163
Target:  5'- cGGCUAcUCGCgcugggaCGAAGCCAUCA-CCGa- -3'
miRNA:   3'- -UCGGU-AGCG-------GCUUCGGUAGUaGGCgu -5'
18639 5' -56.4 NC_004682.1 + 30935 0.66 0.605626
Target:  5'- cGCCGucggaUCGCCGAcgaGGCUgAUCuguuggaccucgcacGUCCGCAg -3'
miRNA:   3'- uCGGU-----AGCGGCU---UCGG-UAG---------------UAGGCGU- -5'
18639 5' -56.4 NC_004682.1 + 48947 0.66 0.601202
Target:  5'- uGGCCGUCGaugUGGAGuCCcUCGcCCGCAg -3'
miRNA:   3'- -UCGGUAGCg--GCUUC-GGuAGUaGGCGU- -5'
18639 5' -56.4 NC_004682.1 + 42318 0.66 0.59016
Target:  5'- uGCCGUCGUgGAAGaCCucuugcucgAUCA-CCGCGu -3'
miRNA:   3'- uCGGUAGCGgCUUC-GG---------UAGUaGGCGU- -5'
18639 5' -56.4 NC_004682.1 + 47405 0.66 0.579154
Target:  5'- uGUCcggAUCGCCGggGCCGUCGaaccucagucccUUCGUc -3'
miRNA:   3'- uCGG---UAGCGGCuuCGGUAGU------------AGGCGu -5'
18639 5' -56.4 NC_004682.1 + 30679 0.67 0.568193
Target:  5'- gGGCCugguaGUCGaCUGAGGCCAUCAaUUgGCc -3'
miRNA:   3'- -UCGG-----UAGC-GGCUUCGGUAGU-AGgCGu -5'
18639 5' -56.4 NC_004682.1 + 31761 0.67 0.568193
Target:  5'- gAGCCcggacgaaGUCGCgGAAGCCccagagGUCAUCCuCGu -3'
miRNA:   3'- -UCGG--------UAGCGgCUUCGG------UAGUAGGcGU- -5'
18639 5' -56.4 NC_004682.1 + 4754 0.67 0.546436
Target:  5'- -aCCA-CGCCGAAGCCGaCGaCUGCGg -3'
miRNA:   3'- ucGGUaGCGGCUUCGGUaGUaGGCGU- -5'
18639 5' -56.4 NC_004682.1 + 33711 0.67 0.524953
Target:  5'- aGGaCCcgCGCCgGAAGCCAgugCGUCgGUg -3'
miRNA:   3'- -UC-GGuaGCGG-CUUCGGUa--GUAGgCGu -5'
18639 5' -56.4 NC_004682.1 + 44667 0.67 0.514331
Target:  5'- cGUCGUCguaGCCGAaauAGCCGUCGaCuCGCAg -3'
miRNA:   3'- uCGGUAG---CGGCU---UCGGUAGUaG-GCGU- -5'
18639 5' -56.4 NC_004682.1 + 10147 0.68 0.503797
Target:  5'- cGGCaagcgCGCCGggGUCA---UCCGCAa -3'
miRNA:   3'- -UCGgua--GCGGCuuCGGUaguAGGCGU- -5'
18639 5' -56.4 NC_004682.1 + 4370 0.68 0.483021
Target:  5'- cGCCGUCaCCGAAGCCg----CCGCc -3'
miRNA:   3'- uCGGUAGcGGCUUCGGuaguaGGCGu -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.