miRNA display CGI


Results 1 - 20 of 29 are showing below:
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ID Location Perfect MFE.* RefSeq Acc. strand Start Position R_P_ratio# P value
Predicted miRNA align pattern
18640 5' -59.7 NC_004682.1 + 23882 0.66 0.491438
Target:  5'- aAGUUCCUGGGCcugacgggcaccgGCCacacccccgaggACGCGGcUGCCgCGa -3'
miRNA:   3'- -UCAAGGGCUUG-------------CGG------------UGCGCC-ACGG-GC- -5'
18640 5' -59.7 NC_004682.1 + 1450 0.66 0.482489
Target:  5'- --aUCUCG-ACGCCA-GCGGcgaGCCCGu -3'
miRNA:   3'- ucaAGGGCuUGCGGUgCGCCa--CGGGC- -5'
18640 5' -59.7 NC_004682.1 + 9392 0.66 0.472639
Target:  5'- cGGUcgaCGAGCGCCuGCGUGGUcgGCCUGc -3'
miRNA:   3'- -UCAaggGCUUGCGG-UGCGCCA--CGGGC- -5'
18640 5' -59.7 NC_004682.1 + 42260 0.66 0.462892
Target:  5'- cGGggCCgGggUaGCCAgCGCGGUGCauCCGc -3'
miRNA:   3'- -UCaaGGgCuuG-CGGU-GCGCCACG--GGC- -5'
18640 5' -59.7 NC_004682.1 + 14458 0.66 0.462892
Target:  5'- uGUUCCaGGACuCCugGCGG-GUCCa -3'
miRNA:   3'- uCAAGGgCUUGcGGugCGCCaCGGGc -5'
18640 5' -59.7 NC_004682.1 + 31800 0.66 0.45325
Target:  5'- cGUUCUCcacGACGCgGaucacuacCGUGGUGCCCGc -3'
miRNA:   3'- uCAAGGGc--UUGCGgU--------GCGCCACGGGC- -5'
18640 5' -59.7 NC_004682.1 + 8958 0.67 0.44372
Target:  5'- cGGUUCCUGcGCgGCCagcucGCGCGGUcugugcugGCCCc -3'
miRNA:   3'- -UCAAGGGCuUG-CGG-----UGCGCCA--------CGGGc -5'
18640 5' -59.7 NC_004682.1 + 804 0.67 0.440883
Target:  5'- ----aCCGAACGCCACccuggccgcauauaGCGGgccaggaGCCCGc -3'
miRNA:   3'- ucaagGGCUUGCGGUG--------------CGCCa------CGGGC- -5'
18640 5' -59.7 NC_004682.1 + 4616 0.67 0.425003
Target:  5'- --gUCCCGGAgGCCACGCucgcUGCCg- -3'
miRNA:   3'- ucaAGGGCUUgCGGUGCGcc--ACGGgc -5'
18640 5' -59.7 NC_004682.1 + 13377 0.68 0.389026
Target:  5'- cAGUUCCUGGAUcagGuCCGgGCGGUcuacgaagGCCCGu -3'
miRNA:   3'- -UCAAGGGCUUG---C-GGUgCGCCA--------CGGGC- -5'
18640 5' -59.7 NC_004682.1 + 48599 0.68 0.389026
Target:  5'- uGUUCuCCGGGCaCCGCGUGGcGUUCGg -3'
miRNA:   3'- uCAAG-GGCUUGcGGUGCGCCaCGGGC- -5'
18640 5' -59.7 NC_004682.1 + 30616 0.68 0.389026
Target:  5'- cGUcCuuGAACGCCugGaucaucgucCGGUcGCCCGa -3'
miRNA:   3'- uCAaGggCUUGCGGugC---------GCCA-CGGGC- -5'
18640 5' -59.7 NC_004682.1 + 37518 0.68 0.380349
Target:  5'- -cUUCgCGAACuCCucaGCGGUGCCCu -3'
miRNA:   3'- ucAAGgGCUUGcGGug-CGCCACGGGc -5'
18640 5' -59.7 NC_004682.1 + 44509 0.68 0.380348
Target:  5'- gGGgagUCCCGGAC-CCA-GCGGgucgGCCUGu -3'
miRNA:   3'- -UCa--AGGGCUUGcGGUgCGCCa---CGGGC- -5'
18640 5' -59.7 NC_004682.1 + 14218 0.68 0.355105
Target:  5'- cGUUCCCGAugGUCaacgucaggcGCGuCGGUGgUCCa -3'
miRNA:   3'- uCAAGGGCUugCGG----------UGC-GCCAC-GGGc -5'
18640 5' -59.7 NC_004682.1 + 16648 0.68 0.346956
Target:  5'- aAGUUCCagcaGGCGCUGCGCGGcaugcGCUCGg -3'
miRNA:   3'- -UCAAGGgc--UUGCGGUGCGCCa----CGGGC- -5'
18640 5' -59.7 NC_004682.1 + 909 0.68 0.346956
Target:  5'- ---gUCCG-ACGCaacaaagACGCGGUGCCCa -3'
miRNA:   3'- ucaaGGGCuUGCGg------UGCGCCACGGGc -5'
18640 5' -59.7 NC_004682.1 + 24620 0.69 0.331064
Target:  5'- ---aCCCGGcgaACGCCACGggcucCGGUGCCa- -3'
miRNA:   3'- ucaaGGGCU---UGCGGUGC-----GCCACGGgc -5'
18640 5' -59.7 NC_004682.1 + 30559 0.69 0.323321
Target:  5'- uGGUgaucUCCCGGucGgGCCACGCG--GCCCGu -3'
miRNA:   3'- -UCA----AGGGCU--UgCGGUGCGCcaCGGGC- -5'
18640 5' -59.7 NC_004682.1 + 22844 0.69 0.308243
Target:  5'- aAGgUCCCgGAGC-CCGCGCuGGUGCgCGg -3'
miRNA:   3'- -UCaAGGG-CUUGcGGUGCG-CCACGgGC- -5' 
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Note:
      When operating RNAhybrid, the pipeline first calculates the perfect minimum free energy (Perfect mfe *) of a putative miRNA when the entire putative miRNA binds to a perfectly complementary target site, then it calculates the minimum free energy of RNA duplex (mfe of the miRNA/mRNA duplex), abbreviated as Rd_mfe. An alignment for which the Rd_mfe to its correspondent Perfect mfe ratio (R_P_ratio #) is more than 66% is regarded as a positive alignment as described by Krek et al. (21). The P_value is calculated by RNAhybrid.

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TDL, Institute of Biomedical Science, Academia Sinica, Taipei, Taiwan.
Copyright © 2007 TDL. All rights reserved.